SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF2930 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 11 hits to proteins with known functional sites (download)

O06976 HPr-like protein Crh; Catabolite repression HPr from Bacillus subtilis (strain 168) (see 3 papers)
39% identity, 94% coverage: 1:84/89 of query aligns to 1:84/85 of O06976

query
sites
O06976
M
 
M
I
 
V
K
 
Q
T
 
Q
T
 
K
V
 
V
T
 
E
I
 
V
S
 
R
N
 
L
K
 
K
L
 
T
G
 
G
L
 
L
H
x
Q
A
 
A
R
 
R
A
 
P
S
 
A
A
 
A
K
 
L
L
 
F
T
 
V
K
 
Q
L
 
E
A
 
A
G
 
N
G
 
R
F
 
F
A
 
T
C
 
S
D
 
D
V
 
V
W
 
F
M
 
L
S
 
E
R
 
K
G
 
D
E
 
G
R
 
K
R
 
K
V
 
V
N
 
N
A
 
A
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
L
M
 
M
M
 
S
L
 
L
A
 
A
A
 
V
G
 
S
I
 
T
G
 
G
S
 
T
V
 
E
V
 
V
E
 
T
I
 
L
E
 
I
T
 
A
D
 
Q
G
 
G
K
 
E
D
 
D
E
 
E
Q
 
Q
P
 
E
A
 
A
M
 
L
D
 
E
A
 
K
L
 
L
V
 
A
A
 
A
L
 
Y
V
 
V
N
 
Q
D
 
E
K
 
E

1pohA The 2.0 angstroms resolution structure of escherichia coli histidine- containing phosphocarrier protein hpr: a redetermination (see paper)
35% identity, 93% coverage: 1:83/89 of query aligns to 1:83/85 of 1pohA

query
sites
1pohA
M
 
M
I
 
F
K
 
Q
T
 
Q
T
 
E
V
 
V
T
 
T
I
 
I
S
 
T
N
 
A
K
 
P
L
 
N
G
 
G
L
 
L
H
 
H
A
 
T
R
 
R
A
 
P
S
 
A
A
 
A
K
 
Q
L
 
F
T
 
V
K
 
K
L
 
E
A
 
A
G
 
K
G
 
G
F
 
F
A
 
T
C
 
S
D
 
E
V
 
I
W
 
T
M
 
V
S
 
T
R
 
S
G
x
N
E
 
G
R
x
K
R
 
S
V
 
A
N
 
S
A
 
A
K
 
K
S
 
S
I
 
L
M
 
F
G
 
K
V
 
L
M
 
Q
M
 
T
L
 
L
A
 
G
A
 
L
G
 
T
I
 
Q
G
 
G
S
 
T
V
 
V
V
 
V
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G
K
 
E
D
 
D
E
 
E
Q
 
Q
P
 
K
A
 
A
M
 
V
D
 
E
A
 
H
L
 
L
V
 
V
A
 
K
L
 
L
V
 
M
N
 
A
D
 
E

1j6tB Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
35% identity, 93% coverage: 1:83/89 of query aligns to 1:83/85 of 1j6tB

query
sites
1j6tB
M
 
M
I
 
F
K
 
Q
T
 
Q
T
 
E
V
 
V
T
 
T
I
 
I
S
 
T
N
 
A
K
 
P
L
 
N
G
 
G
L
 
L
H
|
H
A
x
T
R
 
R
A
 
P
S
 
A
A
 
A
K
 
Q
L
 
F
T
 
V
K
 
K
L
 
E
A
 
A
G
 
K
G
 
G
F
 
F
A
 
T
C
 
S
D
 
E
V
 
I
W
 
T
M
 
V
S
 
T
R
 
S
G
 
N
E
 
G
R
 
K
R
 
S
V
 
A
N
 
S
A
 
A
K
 
K
S
 
S
I
 
L
M
 
F
G
 
K
V
 
L
M
 
Q
M
 
T
L
 
L
A
 
G
A
 
L
G
 
T
I
 
Q
G
 
G
S
 
T
V
 
V
V
 
V
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G
K
 
E
D
 
D
E
 
E
Q
 
Q
P
 
K
A
 
A
M
 
V
D
 
E
A
 
H
L
 
L
V
 
V
A
 
K
L
 
L
V
 
M
N
 
A
D
 
E

P0AA04 Phosphocarrier protein HPr; Histidine-containing protein from Escherichia coli (strain K12) (see paper)
35% identity, 93% coverage: 1:83/89 of query aligns to 1:83/85 of P0AA04

query
sites
P0AA04
M
 
M
I
 
F
K
 
Q
T
 
Q
T
 
E
V
 
V
T
 
T
I
 
I
S
 
T
N
 
A
K
 
P
L
 
N
G
 
G
L
 
L
H
|
H
A
 
T
R
 
R
A
 
P
S
 
A
A
 
A
K
 
Q
L
 
F
T
 
V
K
 
K
L
 
E
A
 
A
G
 
K
G
 
G
F
 
F
A
 
T
C
 
S
D
 
E
V
 
I
W
 
T
M
 
V
S
 
T
R
 
S
G
 
N
E
 
G
R
 
K
R
 
S
V
 
A
N
 
S
A
 
A
K
 
K
S
 
S
I
 
L
M
 
F
G
 
K
V
 
L
M
 
Q
M
 
T
L
 
L
A
 
G
A
 
L
G
 
T
I
 
Q
G
 
G
S
 
T
V
 
V
V
 
V
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G
K
 
E
D
 
D
E
 
E
Q
 
Q
P
 
K
A
 
A
M
 
V
D
 
E
A
 
H
L
 
L
V
 
V
A
 
K
L
 
L
V
 
M
N
 
A
D
 
E

Q84F84 Phosphocarrier protein HPr; Histidine-containing protein from Lysinibacillus sphaericus (Bacillus sphaericus) (see paper)
38% identity, 87% coverage: 7:83/89 of query aligns to 7:83/88 of Q84F84

query
sites
Q84F84
T
 
T
I
 
V
S
 
I
N
 
D
K
 
P
L
 
L
G
 
G
L
 
I
H
|
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
S
K
 
Q
L
 
L
T
 
V
K
 
A
L
 
K
A
 
A
G
 
T
G
 
P
F
 
F
A
 
A
C
 
S
D
 
A
V
 
I
W
 
E
M
 
V
S
 
R
R
 
T
G
 
E
E
 
E
R
 
K
R
 
A
V
 
A
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
L
G
 
G
V
 
V
M
 
M
M
 
G
L
 
L
A
 
A
A
 
L
G
 
K
I
 
Q
G
 
G
S
 
S
V
 
Q
V
 
F
E
 
T
I
 
L
E
 
Y
T
 
V
D
 
E
G
 
G
K
 
E
D
 
D
E
 
E
Q
 
D
P
 
Q
A
 
A
M
 
F
D
 
E
A
 
A
L
 
L
V
 
A
A
 
T
L
 
L
V
 
L
N
 
T
D
 
E

O69250 Phosphocarrier protein HPr; Histidine-containing protein from Priestia megaterium (Bacillus megaterium) (see 2 papers)
38% identity, 87% coverage: 1:77/89 of query aligns to 1:77/88 of O69250

query
sites
O69250
M
 
M
I
 
A
K
 
Q
T
 
K
T
 
T
V
 
F
T
 
T
I
 
V
S
 
T
N
 
A
K
 
D
L
 
S
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
T
K
 
T
L
 
L
T
 
V
K
 
Q
L
 
A
A
 
A
G
 
S
G
 
K
F
 
F
A
 
D
C
 
S
D
 
D
V
 
I
W
 
N
M
 
L
S
 
E
R
 
F
G
 
N
E
 
G
R
 
K
R
 
T
V
 
V
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
V
M
 
M
M
 
S
L
 
L
A
 
G
A
 
I
G
 
Q
I
 
K
G
 
G
S
 
A
V
 
T
V
 
I
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G
K
 
S
D
 
D
E
 
E
Q
 
A
P
 
D
A
 
A
M
 
L
D
 
A
A
 
A
L
 
L

P24366 Phosphocarrier protein HPr; Histidine-containing protein from Streptococcus salivarius (see paper)
41% identity, 91% coverage: 8:88/89 of query aligns to 8:85/87 of P24366

query
sites
P24366
I
 
I
S
 
V
N
 
A
K
 
E
L
 
T
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
T
K
 
L
L
 
L
T
 
V
K
 
Q
L
 
T
A
 
A
G
 
S
G
 
K
F
 
F
A
 
A
C
 
S
D
 
D
V
 
I
W
 
T
M
 
L
S
 
D
R
 
Y
G
 
K
E
 
G
R
 
K
R
 
A
V
 
V
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
V
M
 
M
M
 
S
L
 
L
A
 
G
A
 
V
G
 
G
I
 
Q
G
 
G
S
 
A
V
 
D
V
 
V
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G
K
 
A
D
 
D
E
 
-
Q
 
-
P
 
-
A
 
A
M
 
D
D
 
D
A
 
A
L
 
I
V
 
V
A
 
A
L
 
I
V
 
A
N
 
E
D
 
T
K
 
M
F
 
T
G
 
K
E
 
E
G
 
G

P08877 Phosphocarrier protein HPr; Histidine-containing protein from Bacillus subtilis (strain 168) (see 5 papers)
36% identity, 87% coverage: 1:77/89 of query aligns to 1:77/88 of P08877

query
sites
P08877
M
|
M
I
 
A
K
 
Q
T
 
K
T
 
T
V
 
F
T
 
K
I
 
V
S
 
T
N
 
A
K
 
D
L
x
S
G
 
G
L
 
I
H
|
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
T
K
 
V
L
 
L
T
 
V
K
 
Q
L
 
T
A
 
A
G
 
S
G
 
K
F
 
Y
A
 
D
C
 
A
D
 
D
V
 
V
W
 
N
M
 
L
S
 
E
R
 
Y
G
 
N
E
 
G
R
 
K
R
 
T
V
 
V
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
V
M
 
M
M
 
S
L
 
L
A
 
G
A
 
I
G
 
A
I
 
K
G
 
G
S
 
A
V
 
E
V
 
I
E
 
T
I
 
I
E
 
S
T
 
A
D
 
S
G
 
G
K
 
A
D
 
D
E
 
E
Q
 
N
P
 
D
A
 
A
M
 
L
D
 
N
A
 
A
L
 
L

Q9WXK8 Phosphocarrier protein HPr; Histidine-containing protein from Streptococcus equinus (Streptococcus bovis) (see paper)
44% identity, 62% coverage: 13:67/89 of query aligns to 13:67/87 of Q9WXK8

query
sites
Q9WXK8
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
T
K
 
L
L
 
L
T
 
V
K
 
Q
L
 
T
A
 
A
G
 
S
G
 
K
F
 
F
A
 
A
C
 
S
D
 
D
V
 
I
W
 
T
M
 
L
S
 
D
R
 
Y
G
 
K
E
 
G
R
 
K
R
 
A
V
 
V
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
V
M
 
M
M
 
S
L
 
L
A
 
G
A
 
V
G
 
G
I
 
Q
G
 
G
S
 
A
V
 
D
V
 
V
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G

Q9CJ83 Phosphocarrier protein HPr; Histidine-containing protein from Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) (see paper)
37% identity, 73% coverage: 13:77/89 of query aligns to 13:77/88 of Q9CJ83

query
sites
Q9CJ83
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
T
K
 
L
L
 
L
T
 
V
K
 
H
L
 
T
A
 
A
G
 
S
G
 
K
F
 
F
A
 
T
C
 
S
D
 
E
V
 
I
W
 
T
M
 
L
S
 
E
R
 
Y
G
 
K
E
 
G
R
 
K
R
 
S
V
 
V
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
V
M
 
M
M
 
S
L
 
L
A
 
G
A
 
V
G
 
G
I
 
Q
G
 
G
S
 
A
V
 
D
V
 
V
E
 
T
I
 
I
E
 
S
T
 
A
D
 
E
G
 
G
K
 
A
D
 
D
E
 
A
Q
 
D
P
 
D
A
 
A
M
 
I
D
 
S
A
 
T
L
 
I

Q9F166 Phosphocarrier protein HPr from Bacillus thuringiensis subsp. israelensis (see 2 papers)
34% identity, 84% coverage: 13:87/89 of query aligns to 12:87/87 of Q9F166

query
sites
Q9F166
G
 
G
L
 
I
H
|
H
A
 
A
R
 
R
A
 
P
S
 
A
A
 
T
K
 
L
L
 
L
T
 
V
K
 
N
L
 
T
A
 
A
G
 
S
G
 
K
F
 
F
A
 
G
C
 
S
D
 
D
V
 
I
W
 
N
M
 
L
S
 
E
R
 
Y
G
 
N
E
 
G
R
 
K
R
 
N
V
 
V
N
 
N
A
 
L
K
 
K
S
|
S
I
 
I
M
 
M
G
 
G
V
 
V
M
 
M
M
 
S
L
 
L
A
 
G
A
 
I
G
 
Q
I
 
Q
G
 
N
S
 
A
V
 
E
V
 
I
E
 
K
I
 
I
E
 
T
T
 
A
D
 
N
G
 
G
K
 
D
D
 
D
E
 
A
Q
 
A
P
 
Q
A
 
A
M
 
L
D
 
A
A
 
A
L
 
I
-
 
E
V
 
E
A
 
T
L
 
M
V
 
K
N
 
N
D
 
E
K
 
G
F
 
L
G
 
G
E
 
E

Query Sequence

>GFF2930
MIKTTVTISNKLGLHARASAKLTKLAGGFACDVWMSRGERRVNAKSIMGVMMLAAGIGSV
VEIETDGKDEQPAMDALVALVNDKFGEGE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory