Comparing GFF2940 FitnessBrowser__Phaeo:GFF2940 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6czmE Crystal structure of medicago truncatula atp-phosphoribosyltransferase in tense form (see paper)
27% identity, 99% coverage: 3:229/230 of query aligns to 10:235/342 of 6czmE
Sites not aligning to the query:
2vd3A The structure of histidine inhibited hisg from methanobacterium thermoautotrophicum
29% identity, 93% coverage: 3:216/230 of query aligns to 5:196/289 of 2vd3A
Sites not aligning to the query:
7dahC Adenosine triphosphate phosphoribosyltransferase from vibrio cholerae in complex with atp and prpp
28% identity, 99% coverage: 3:230/230 of query aligns to 4:216/288 of 7dahC
5u99A Transition state analysis of adenosine triphosphate phosphoribosyltransferase (see paper)
28% identity, 85% coverage: 3:198/230 of query aligns to 4:177/278 of 5u99A
1nh8A Atp phosphoribosyltransferase (atp-prtase) from mycobacterium tuberculosis in complex with amp and histidine (see paper)
28% identity, 85% coverage: 3:198/230 of query aligns to 2:175/276 of 1nh8A
Sites not aligning to the query:
5lhtA Atp phosphoribosyltransferase from mycobacterium tuberculosis in complex with the allosteric activator 3-(2-thienyl)-l-alanine (see paper)
28% identity, 85% coverage: 3:198/230 of query aligns to 2:175/284 of 5lhtA
Sites not aligning to the query:
5ub9A Catalytic core domain of adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 3:206/220 of 5ub9A
5ubgA Catalytic core domain of adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni with bound phosphoribosyl-atp (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 4:208/222 of 5ubgA
5ubiA Catalytic core domain of adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni with bound prpp (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 4:208/218 of 5ubiA
4yb7A Adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni in complex with atp (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 4:208/296 of 4yb7A
4yb6A Adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni in complex with the inhibitors amp and histidine (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 4:208/296 of 4yb6A
Sites not aligning to the query:
4yb6E Adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni in complex with the inhibitors amp and histidine (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 4:205/293 of 4yb6E
Sites not aligning to the query:
4yb7C Adenosine triphosphate phosphoribosyltransferase from campylobacter jejuni in complex with atp (see paper)
25% identity, 96% coverage: 3:223/230 of query aligns to 4:208/294 of 4yb7C
1q1kA Structure of atp-phosphoribosyltransferase from e. Coli complexed with pr-atp (see paper)
26% identity, 99% coverage: 3:230/230 of query aligns to 3:215/288 of 1q1kA
1h3dA Structure of the e.Coli atp-phosphoribosyltransferase (see paper)
26% identity, 99% coverage: 3:230/230 of query aligns to 3:215/288 of 1h3dA
6czmF Crystal structure of medicago truncatula atp-phosphoribosyltransferase in tense form (see paper)
25% identity, 99% coverage: 3:229/230 of query aligns to 3:208/315 of 6czmF
Sites not aligning to the query:
6fcyA Catalytic subunit hisg from psychrobacter arcticus atp phosphoribosyltransferase (hiszg atpprt) in complex with prpp and adp
25% identity, 80% coverage: 9:191/230 of query aligns to 9:170/208 of 6fcyA
6fd9A Catalytic subunit hisg from psychrobacter arcticus atp phosphoribosyltransferase (hiszg atpprt) in complex with amp
25% identity, 80% coverage: 9:191/230 of query aligns to 9:170/209 of 6fd9A
6fcwA Catalytic subunit hisg from psychrobacter arcticus atp phosphoribosyltransferase (hiszg atpprt) in complex with pratp
25% identity, 80% coverage: 9:191/230 of query aligns to 9:170/209 of 6fcwA
6fctA Catalytic subunit hisg from psychrobacter arcticus atp phosphoribosyltransferase (hiszg atpprt) in complex with prpp and atp
25% identity, 80% coverage: 9:191/230 of query aligns to 9:170/209 of 6fctA
>GFF2940 FitnessBrowser__Phaeo:GFF2940
MSLKLGVPSKGRLMEKTFEWFAKRGITLSRTGSDREYAGAVAGIDGIDLVLLSAGEMPRE
LAAGRIHLGVTGTDLVQEKLPLWEQQVEEIAGLGFGHADLILAVPQIWVDVETIDDLDAV
AAAFRAKHGHRLRIATKYHRLVREYLMDAGVADYQLVDSQGATEGTVKNETAEMVADITS
TGETLRANHLKLMSDGLILRSQATLWRSRVAKYSAKEKATLGDLLERLHG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory