Comparing GFF2946 FitnessBrowser__WCS417:GFF2946 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
25% identity, 27% coverage: 745:1187/1622 of query aligns to 483:896/1042 of Q54VI3
>GFF2946 FitnessBrowser__WCS417:GFF2946
MAFFTAASKADFQHQLQAALAQHISEQALPQVALFAEQFFGIISLDELTQRRLSDLAGCT
LSAWRLLERFDHTQPQVRVYNPDYERHGWQSTHTAVEVLHHDLPFLVDSVRTELNRRGYS
IHTLQTTVLSVRRGAKGELLEILPKGTQGEGIQQESLMYLEIDRCANAAELNVLSKELEQ
VLGEVRVAVADFEPMKAKVQDLLAGIDASQFSIDGEEKAEIKNFLEWLVGNHFTFLGYEE
FVVRDEADGGHIEYDADSFLGLTKLLRAGLTADDLRIEDYAVAYLREPTVLSFAKAAHPS
RVHRPAYPDYVSIREISADGKVIKEHRFMGLYTSSVYGESVRVIPYIRRKVAEIERRSGF
QPKAHLGKELAQVVEVLPRDDLFQTPVDELFSTVMSIVQIQERNKIRVFLRKDPYGRFCY
CLAYVPRDIYSTEVRQKIQQVLMDRLKASDCEFWTFFSESVLARVQLILRVDPKNRLDID
PLQLEKEVVQACRSWQDDYSSLVVESFGEAHGTNVLADFPKGFPAGYRERFAAHSAVVDM
QHLLSLTEANPLVMSFYQPLGQVSGQRELHCKLYHADTPLALSDVLPILENLGLRVLGEF
PYRLRHANGREFWIHDFAFIAAEGVNLDIQQLNDTLQDAFVHIVHGDAENDAFNRLVLTA
GLPWRDVALLRAYARYLKQIRLGFDLGYIASTLNNHTDIARELTRLFKTRFYLARKLTAD
DLEDKQQRLEQAILSALDDVQVLNEDRILRRYLDLIKATLRTNFYQTDANGQNKSYFSFK
FDPRAIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQ
QVKNSVIVPVGAKGGFLPRRLPLGGSRDEIAAEGIACYRIFISGLLDITDNLKDGALVPP
ANVVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITA
KGAWVGVQRHFRERGINVQEDSITVVGVGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFID
PNPNPATSFVERQRMFELPRSAWTDYDTSIMSEGGGIFSRSAKSIAISPQMKERFDISAD
KLTPTELLNALLKAPVDLLWNGGIGTYVKASTESHADVGDKANDALRVNGNELRCKVVGE
GGNLGMTQLGRVEFGLNGGGSNTDFIDNAGGVDCSDHEVNIKILLNEVVQAGDMTDKQRN
QLLASMTDEVGNLVLGNNYKQTQALSLAARRAYERAAEYKRLMSDLEGRGKLDRAIEYLP
TEEQLTERAATGKGLTRPELSVLISYSKIDLKEALLKSLVPDDEYLTRDMETAFPPSLVA
KFSEAMRRHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSPANVAGAYVIVRDIFHL
PHWFRQIEALDHQVSADVQLELMDELMRLGRRATRWFLRSRRNEQDAGRDTAHFGPHLAA
LGLKLDELLEGPTREGWQNRYGKYTEAGVPELLARMVAGTTHLYTLLPIIEAADVTGHDA
AEVAKAYFAVGSALDLPWYLQQISDLPVANNWQAQAREAFRDDVDWQQRAITISVLQMAD
APQDMEARVALWLEQHKDMADRWVAMMVEIRAAVGTDYAMYAVANRELLDLALSGQSALQ
AV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory