SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF2958 PS417_15140 3-carboxymuconate cyclase to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
29% identity, 77% coverage: 71:370/391 of query aligns to 41:311/331 of P52697

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P52697
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L

Q72U69 Antigen Lp49; Leptospiral 49 kilodalton protein; Lp49 from Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (see paper)
28% identity, 34% coverage: 232:364/391 of query aligns to 324:454/456 of Q72U69

query
sites
Q72U69
P
 
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D

Query Sequence

>GFF2958 PS417_15140 3-carboxymuconate cyclase
MMMRKFWPLLMAGSVGAMSVQAAPAETYELLVGSYTAGSSEGIYRLQFNSRTGQFSGKPV
LAAKAANPSWLTVSKDQKHLFVVNENGPGQNDPVGRVSSYSIDPQNYQLTLINQVQSLGN
EPTHSSVAADGRYVFVANYSVLEDPGGSLAALPVDATGKLSAPVQLSGHPSSRVNPERQA
SNHVHSVVSSPDGQYVFVQDLGADKVFAYHYDPKANPEQPLAPASPASVQLPPGSGPRHL
LFSADGKHAWLTTEMSAQVAVFDYKDGQLTQTQLVDFAAGQPVSDKAGAALHASSDGKFL
YVSNRGTANQLLVFSIDPATAHLKELQRRPVEGDHPREFSLDPSGRFLLIANQKSNEIVV
VERDPKTGLLGKTVQKMPIDAPSDLKFLVRQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory