Comparing GFF2973 FitnessBrowser__Phaeo:GFF2973 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
6vh5D Crystal structure of prephenate dehydratase from brucella melitensis biovar abortus 2308 in complex with phenylalanine
53% identity, 99% coverage: 2:276/277 of query aligns to 6:282/282 of 6vh5D
7am0B Gqqa- a novel type of quorum quenching acylases (see paper)
51% identity, 98% coverage: 5:276/277 of query aligns to 4:275/278 of 7am0B
2qmxA The crystal structure of l-phe inhibited prephenate dehydratase from chlorobium tepidum tls (see paper)
38% identity, 96% coverage: 5:270/277 of query aligns to 4:273/278 of 2qmxA
7alzA Gqqa- a novel type of quorum quenching acylases (see paper)
51% identity, 44% coverage: 156:276/277 of query aligns to 72:191/194 of 7alzA
P0A9J8 Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli (strain K12)
31% identity, 98% coverage: 4:274/277 of query aligns to 105:379/386 of P0A9J8
Sites not aligning to the query:
3mwbB The crystal structure of prephenate dehydratase in complex with l-phe from arthrobacter aurescens to 2.0a
32% identity, 97% coverage: 9:276/277 of query aligns to 7:277/303 of 3mwbB
3mwbA The crystal structure of prephenate dehydratase in complex with l-phe from arthrobacter aurescens to 2.0a
32% identity, 97% coverage: 9:276/277 of query aligns to 7:280/306 of 3mwbA
3luyA Putative chorismate mutase from bifidobacterium adolescentis
23% identity, 95% coverage: 9:271/277 of query aligns to 10:284/326 of 3luyA
>GFF2973 FitnessBrowser__Phaeo:GFF2973
MTQRIAIQGELGSYSHEACRKERPDMDVLPCRNFEDAINAVRSGAAELAMLPVENSTYGR
VADIHRLLPHSGLHIIDEAFVRVHINLLGVPGAQLEDIKEAHSHLVLLPQCARFLSENNI
HGRVSPDNARAARDVAEQGDKSHAALASELAGEIYGLEVLARHIEDHGNNTTRFLTMSRD
PNTERRGNHGMITSFVFQVRNIPAALYKAMGGFATNGINMTKLESYMVDGSFTATQFYAD
IDGHPDDPNVRLAMDELAYFTTNIEILGVYPANDDRF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory