Comparing GFF3091 FitnessBrowser__Marino:GFF3091 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
1yw4A Crystal structure of the succinylglutamate desuccinylase from chromobacterium violaceum, northeast structural genomics target cvr22.
37% identity, 95% coverage: 11:342/351 of query aligns to 3:314/319 of 1yw4A
2bcoA X-ray structure of succinylglutamate desuccinalase from vibrio parahaemolyticus (rimd 2210633) at the resolution 2.3 a, northeast structural genomics target vpr14
34% identity, 88% coverage: 33:340/351 of query aligns to 24:323/338 of 2bcoA
>GFF3091 FitnessBrowser__Marino:GFF3091
MTVSSDLFGSSHDWLSHTLDNADASLPETKAFLPDGTRISRKAVGVLDIVPPAARSNPNA
EAIIVSAGVHGNETAPIEVLNRLVSELIEGEWELACPVLLIMGNPPAMVAGKRFLEVNLN
RLFDGAHSRNEYEGLAEAARAQELEEACRQFAMANPQALYHYDLHTAIRPSHRERFALYP
FVEGRTVPVDQCDFLLEAEVETLLLQHKAGTTFSSFSSSLLKAESFTVELGKVRPFGQND
LGRFSGIRDALRRRFKGQPSPAPQPPFDHLTVFEVVHEILNTGKNFRFHIPDDVANFTEY
QPGTVIWEDDETSYRVGHSPEAIVFPNPEVPVGHRVGLMIRPETGSDESFI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory