Comparing GFF3095 FitnessBrowser__Marino:GFF3095 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
1ynhB Crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli (see paper)
56% identity, 99% coverage: 4:445/446 of query aligns to 1:439/440 of 1ynhB
P76216 N-succinylarginine dihydrolase; EC 3.5.3.23 from Escherichia coli (strain K12) (see paper)
56% identity, 99% coverage: 4:445/446 of query aligns to 2:440/447 of P76216
1yniA Crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli (see paper)
56% identity, 99% coverage: 4:445/446 of query aligns to 1:439/440 of 1yniA
>GFF3095 FitnessBrowser__Marino:GFF3095
MVKHAVEANFDGLVGPTHNYAGLSWGNVASKSNVSSVSNPKEAALQGLAKMKRLADRGYV
QGVLPPHERPHIPTLRALGFEGPDARVLEQAAKSSPSILAAVSSASPMWTANAATVSPSA
DTSDHRVHFTPANLSAKFHRSIEHAVTGRALKSIFADESYFAHHPALPSVSHFGDEGAAN
HTRLCAGYGEPGVELFVYGQMAFNEQAPAPKKYPARQTLEASQAVARLHGLRDQNAVFAQ
QNPDAIDGGVFHNDVIAVGNGNTLFYHEMAFLNEAQVLADIRERLTGAELEAVRVSSADV
PLEDAVASYLFNSQLLNTPDGMLLAVPGECREVASVSRYLDGLVKSGGPITAVEVFDVKQ
SMRNGGGPACLRLRVVLNDDELKAINRGVLLTDELYERLTTWVEAHYRDELSQNELGDPM
LLEEVRKALDELTGIMGLGSIYDFQL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory