Comparing GFF3116 HP15_3059 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
54% identity, 100% coverage: 1:232/233 of query aligns to 6:238/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 100% coverage: 1:232/233 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 100% coverage: 1:232/233 of query aligns to 4:253/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 95% coverage: 11:232/233 of query aligns to 12:235/240 of 6mjpA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 91% coverage: 1:211/233 of query aligns to 1:214/240 of 4ymuJ
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
33% identity, 91% coverage: 1:211/233 of query aligns to 4:214/285 of 4yerA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
31% identity, 99% coverage: 2:232/233 of query aligns to 3:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 91% coverage: 20:232/233 of query aligns to 21:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 91% coverage: 20:232/233 of query aligns to 21:235/238 of 6s8gA
Sites not aligning to the query:
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
30% identity, 89% coverage: 4:211/233 of query aligns to 242:473/501 of P04983
Sites not aligning to the query:
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 99% coverage: 2:232/233 of query aligns to 4:236/241 of 6mbnA
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 88% coverage: 6:210/233 of query aligns to 5:221/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 88% coverage: 6:210/233 of query aligns to 5:221/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 88% coverage: 6:210/233 of query aligns to 5:221/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 88% coverage: 6:210/233 of query aligns to 5:221/242 of 2oljA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
32% identity, 91% coverage: 20:231/233 of query aligns to 21:234/234 of 6b89A
Sites not aligning to the query:
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
32% identity, 91% coverage: 20:231/233 of query aligns to 21:234/234 of 4p31A
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
32% identity, 91% coverage: 20:230/233 of query aligns to 21:233/233 of 6b8bA
Sites not aligning to the query:
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
28% identity, 95% coverage: 4:224/233 of query aligns to 13:243/257 of P0AAH0
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
26% identity, 89% coverage: 4:211/233 of query aligns to 5:214/241 of 4u00A
>GFF3116 HP15_3059 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein
MLVLEDVHTHYGKIEALHGVSVEVKKGEIVSLIGANGAGKTTLLMTVCGNPRASSGRIFL
EGREITNESTAQIMRSGIAIVPEGRRVFSGLTVEENLHMGGFFNTKAEIRKSQEHVYELF
PRLKEREHQRAGTMSGGEQQMLAIGRALMSRPEMIILDEPSLGLAPLIIKQIFEIIGQLR
EEGITVFLVEQNAHQALNLADRGYVLETGKIRLHDTGKNLLNNPDVQNAYLGG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory