Comparing GFF3171 FitnessBrowser__WCS417:GFF3171 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
28% identity, 82% coverage: 27:261/288 of query aligns to 50:286/313 of P94529
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
26% identity, 96% coverage: 2:277/288 of query aligns to 3:275/285 of 7cagA
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
24% identity, 79% coverage: 43:270/288 of query aligns to 252:498/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
24% identity, 79% coverage: 43:270/288 of query aligns to 237:483/490 of 4ki0F
>GFF3171 FitnessBrowser__WCS417:GFF3171
MNKVQNNKAWWLVLPVFLLVAFSAVIPMMTVVNYSVQDIFDQSSRYFVGADWYKQVLLDP
RLHDSLLRQFIYSACVLLIEIPLGIAIALTMPTKGRWSSLVLIILAIPLLIPWNVVGTIW
QIFGRADIGLLGYSLNALGISYNYAANTMDAWVTVLVMDVWHWTSLVALLCYSGLRAIPD
VYYQAARIDRASPWAVFRHIQLPKMKSVLLIAVMLRFMDSFMIYTEPFVLTGGGPGNATT
FLSQTLTQMAVGQFDLGPAAAFSLVYFLIILLVSWLFYTAMTHSDANR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory