Comparing GFF3181 FitnessBrowser__psRCH2:GFF3181 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
P48636 Cytokinin riboside 5'-monophosphate phosphoribohydrolase; AMP nucleosidase; PaLOG; EC 3.2.2.n1; EC 3.2.2.4 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
73% identity, 100% coverage: 1:195/195 of query aligns to 1:195/195 of P48636
5zbkA Crystal structure of type-i log from pseudomonas aeruginosa pao1 in complex with amp (see paper)
76% identity, 93% coverage: 2:183/195 of query aligns to 1:182/182 of 5zbkA
5zblD Crystal structure of type-i log from corynebacterium glutamicum in complex with amp (see paper)
50% identity, 93% coverage: 2:183/195 of query aligns to 1:181/181 of 5zblD
Q5ZC82 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; Protein LONELY GUY; EC 3.2.2.n1 from Oryza sativa subsp. japonica (Rice) (see paper)
46% identity, 99% coverage: 3:195/195 of query aligns to 35:229/242 of Q5ZC82
5ajuA Crystal structure of ligand-free phosphoribohydroxylase lonely guy from claviceps purpurea in complex with phosphoribose (see paper)
38% identity, 91% coverage: 6:182/195 of query aligns to 5:204/217 of 5ajuA
O05306 Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Protein LONELY GUY homolog; LOG homolog; EC 3.2.2.n1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
39% identity, 88% coverage: 5:176/195 of query aligns to 12:182/187 of O05306
7w2iA Crystal structure of log (rv1205) from mycobacterium tuberculosis (see paper)
39% identity, 88% coverage: 5:176/195 of query aligns to 8:178/183 of 7w2iA
3sbxA Crystal structure of a putative uncharacterized protein from mycobacterium marinum bound to adenosine 5'-monophosphate amp (see paper)
39% identity, 84% coverage: 5:167/195 of query aligns to 3:161/177 of 3sbxA
>GFF3181 FitnessBrowser__psRCH2:GFF3181
MTLRSICVFCGASRGTNPIYEQAAQDLGRTLAANGIRLIYGGGAVGLMGVVADATMAAGG
EVIGIIPQSLKDAEVGHTGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVW
TWGQLGYHPKPLGLLDINHFYSKLSHFLDHLVDEGFVRPQHRQMLQRSDQPQALIKLLDA
WQPPAHSRWDKTAPQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory