Comparing GFF3190 FitnessBrowser__Marino:GFF3190 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P9WN93 Fumarate hydratase class II; Fumarase C; Aerobic fumarase; Iron-independent fumarase; EC 4.2.1.2 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
48% identity, 99% coverage: 2:454/458 of query aligns to 8:465/474 of P9WN93
4adlA Crystal structures of rv1098c in complex with malate (see paper)
48% identity, 98% coverage: 4:454/458 of query aligns to 2:457/459 of 4adlA
4apbD Crystal structure of mycobacterium tuberculosis fumarase (rv1098c) s318c in complex with fumarate (see paper)
48% identity, 98% coverage: 4:454/458 of query aligns to 2:457/462 of 4apbD
Q9ZCQ4 Fumarate hydratase class II; Fumarase C; Aerobic fumarase; Iron-independent fumarase; EC 4.2.1.2 from Rickettsia prowazekii (strain Madrid E) (see paper)
43% identity, 99% coverage: 1:452/458 of query aligns to 1:459/461 of Q9ZCQ4
P05042 Fumarate hydratase class II; Fumarase C; Aerobic fumarase; Iron-independent fumarase; EC 4.2.1.2 from Escherichia coli (strain K12) (see 4 papers)
46% identity, 93% coverage: 1:425/458 of query aligns to 1:432/467 of P05042
1fuqA Fumarase with bound 3-trimethylsilylsuccinic acid (see paper)
46% identity, 92% coverage: 5:425/458 of query aligns to 2:429/456 of 1fuqA
1fuoA FumarasE C with bound citrate (see paper)
46% identity, 92% coverage: 5:425/458 of query aligns to 2:429/456 of 1fuoA
1fupA Fumarase with bound pyromellitic acid (see paper)
46% identity, 92% coverage: 5:425/458 of query aligns to 1:428/455 of 1fupA
6s88A Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(2-methoxy-5-((1,2,4,5-tetrahydro- 3h-benzo[d]azepin-3-yl)sulfonyl)phenyl)-2-(4-oxo-3,4- dihydrophthalazin-1-yl)acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:448/450 of 6s88A
6s7wA Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(5-(azepan-1-ylsulfonyl)-2- methoxyphenyl)-2-(quinolin-4-yl)acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:448/450 of 6s7wA
6s7sA Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(2-methoxy-5-(n-phenylsulfamoyl) phenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:448/450 of 6s7sA
6s7uA Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(5-(azepan-1-ylsulfonyl)-2- methoxyphenyl)-2-(1h-indol-3-yl)acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:448/450 of 6s7uA
6s7kA Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(2-methoxy-5-(n-methylsulfamoyl) phenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:448/450 of 6s7kA
6s43A Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(5-(azocan-1-ylsulfonyl)-2- methoxyphenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:448/450 of 6s43A
6s7zA Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator n-(5-((3,4-dihydroisoquinolin-2(1h)- yl)sulfonyl)-2-methoxyphenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl) acetamide (see paper)
46% identity, 98% coverage: 4:454/458 of query aligns to 1:447/449 of 6s7zA
5f91A Fumarate hydratase of mycobacterium tuberculosis in complex with formate and allosteric modulator (n-(5-(azepan-1-ylsulfonyl)-2- methoxyphenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide) (see paper)
47% identity, 97% coverage: 13:454/458 of query aligns to 7:445/447 of 5f91A
7lubB Crystal structure of recombinant human fumarase in complex with d-2- amino-3-phosphono-propionic acid (see paper)
43% identity, 97% coverage: 4:449/458 of query aligns to 2:455/462 of 7lubB
P07954 Fumarate hydratase, mitochondrial; Fumarase; HsFH; EC 4.2.1.2 from Homo sapiens (Human) (see 4 papers)
43% identity, 98% coverage: 2:449/458 of query aligns to 48:503/510 of P07954
Sites not aligning to the query:
P08417 Fumarate hydratase, mitochondrial; Fumarase; EC 4.2.1.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
42% identity, 98% coverage: 2:449/458 of query aligns to 26:481/488 of P08417
Sites not aligning to the query:
3r6vG Crystal structure of aspartase from bacillus sp. Ym55-1 with bound l- aspartate (see paper)
39% identity, 100% coverage: 3:458/458 of query aligns to 1:462/463 of 3r6vG
>GFF3190 FitnessBrowser__Marino:GFF3190
MSEFRTETDSLGDVQVPADALWGAQTQRAVENFPVSGQPMPQPFIAAVAQIKRAAAEANT
SLGLLDNDLRDAISQACEDLVKGEYADQFPVDRYQTGSGTSTNMNVNEVIASIARNAGFE
VHPNDHVNMSQSSNDVIPTAIHVSAVIAAKEKLLPALSHLCGVIYEQEAAFSSQVKTGRT
HLMDAMPVTLGQELKTWREQLLAVEKRVEAAADELLAVPQGGTAVGTGINALPEFPGQFV
KFLRANTGYPFTSLDHKFTGQSAVDAPVALSAQLRGAAIVLTKIANDLRWMNSGPIHGLA
EISLPALQPGSSIMPGKVNPVIPESVAMVGAQVMGLDSAVAIAGQSGNFQLNVMLPLVGG
NLLDMTDLLANAAIMLADKAIKDFTVNADNLNAGVGKNPVLVTALNPEIGYSLAADIAKE
AYKTGRPVIDVAEERSGLSRERLEELMDPLKLTRGGIA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory