Comparing GFF3203 FitnessBrowser__Phaeo:GFF3203 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
49% identity, 88% coverage: 12:257/278 of query aligns to 3:240/240 of 1ji0A
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 81% coverage: 32:255/278 of query aligns to 20:253/253 of 1g9xB
Sites not aligning to the query:
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 81% coverage: 32:255/278 of query aligns to 20:253/254 of 1g6hA
Sites not aligning to the query:
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 81% coverage: 31:255/278 of query aligns to 17:235/240 of 6mjpA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 77% coverage: 31:243/278 of query aligns to 16:223/240 of 4ymuJ
Sites not aligning to the query:
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
30% identity, 82% coverage: 14:242/278 of query aligns to 2:225/230 of 6z4wA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
30% identity, 82% coverage: 14:242/278 of query aligns to 2:225/229 of 6z67B
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
30% identity, 81% coverage: 31:255/278 of query aligns to 17:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
30% identity, 81% coverage: 31:255/278 of query aligns to 17:235/238 of 6s8gA
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
30% identity, 81% coverage: 31:255/278 of query aligns to 17:235/235 of 6mhzA
Sites not aligning to the query:
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 81% coverage: 31:255/278 of query aligns to 18:236/241 of 6mbnA
Sites not aligning to the query:
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
30% identity, 81% coverage: 31:254/278 of query aligns to 17:234/234 of 6b89A
Sites not aligning to the query:
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
30% identity, 81% coverage: 31:254/278 of query aligns to 17:234/234 of 4p31A
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 84% coverage: 15:247/278 of query aligns to 1:232/343 of P30750
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
29% identity, 80% coverage: 31:253/278 of query aligns to 17:233/233 of 6b8bA
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
28% identity, 84% coverage: 15:247/278 of query aligns to 2:233/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
28% identity, 84% coverage: 15:247/278 of query aligns to 2:233/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
28% identity, 84% coverage: 15:247/278 of query aligns to 2:233/344 of 3tuiC
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
26% identity, 78% coverage: 31:247/278 of query aligns to 17:227/241 of 4u00A
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
25% identity, 78% coverage: 31:247/278 of query aligns to 18:229/242 of 3c4jA
Sites not aligning to the query:
>GFF3203 FitnessBrowser__Phaeo:GFF3203
MLDTAKTTDVQAETLLEVNNIEVIYNHVILVLKGVSLKVPKGGITALLGGNGAGKTTTLK
AVSNLLHSERGEVTKGSISYRGERIQDRDPAELVKKGVIQVMEGRHCFEHLTVEENLLTG
AYTRSDGNANIQRDLEMVYSYFPRLKERRRSQAGYTSGGEQQMVAMGRALMSRPETILLD
EPSMGLAPQLVEQIFEIVKSINENEGVTFLLAEQNTNVALRYSHYGYILESGRVVMDGPA
AELRENPDVKEFYLGMSDDGRKSFRDVRSYRRRKRWLS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory