SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF3253 FitnessBrowser__Marino:GFF3253 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
48% identity, 56% coverage: 5:65/109 of query aligns to 114:177/200 of 6j2lA

query
sites
6j2lA
L
 
L
E
 
Y
N
 
Q
L
 
L
A
 
E
R
 
Q
V
 
L
L
 
L
E
 
A
A
 
E
R
 
R
K
 
K
E
 
Y
A
 
A
D
 
D
P
 
P
E
 
E
T
 
T
S
 
S
Y
 
Y
V
 
T
A
 
A
S
 
K
L
 
L
H
 
Y
A
 
A
K
 
S
G
 
G
L
 
T
N
 
K
K
 
R
I
 
I
L
 
A
E
 
Q
K
 
K
V
 
V
G
 
G
E
 
E
E
|
E
C
 
G
T
 
V
E
 
E
T
 
T
L
 
A
L
 
L
A
 
A
A
 
A
K
 
T
-
 
V
-
 
H
-
 
D
D
 
R
A
 
F
E
 
E
H
 
L
S
 
T
G
 
N
E
|
E
T
 
A
R
 
S
D
|
D
V
 
L
V
 
M
Y
 
Y

Sites not aligning to the query:

Query Sequence

>GFF3253 FitnessBrowser__Marino:GFF3253
MSDVLENLARVLEARKEADPETSYVASLHAKGLNKILEKVGEECTETLLAAKDAEHSGET
RDVVYETADLWFHSMVMLSRLGLGPKDILDELASRFDLSGLEEKASRNK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory