Comparing GFF33 FitnessBrowser__Marino:GFF33 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
O06724 Oxaloacetate tautomerase YisK; Oxaloacetate decarboxylase YisK; EC 5.3.2.2; EC 4.1.1.112 from Bacillus subtilis (strain 168) (see paper)
35% identity, 81% coverage: 32:274/300 of query aligns to 60:300/301 of O06724
Sites not aligning to the query:
8sutA Crystal structure of yisk from bacillus subtilis in complex with reaction product 4-hydroxy-2-oxoglutaric acid (see paper)
35% identity, 81% coverage: 32:274/300 of query aligns to 61:301/303 of 8sutA
8skyB Crystal structure of yisk from bacillus subtilis in complex with oxalate (see paper)
35% identity, 81% coverage: 32:274/300 of query aligns to 60:300/303 of 8skyB
3qdfA Crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from mycobacterium marinum (see paper)
33% identity, 92% coverage: 1:277/300 of query aligns to 2:250/252 of 3qdfA
Q1NEI7 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase; L-2,4-diketo-3-deoxyrhamnonate hydrolase; L-DKDR hydrolase; SpLRA6; EC 3.7.1.26 from Sphingomonas sp. (strain SKA58) (see paper)
34% identity, 73% coverage: 63:280/300 of query aligns to 60:279/285 of Q1NEI7
8gstC Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Pyruvate bound-form) (see paper)
34% identity, 73% coverage: 63:280/300 of query aligns to 65:284/290 of 8gstC
8gsrA Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) (see paper)
34% identity, 73% coverage: 63:280/300 of query aligns to 65:284/290 of 8gsrA
4dbhA Crystal structure of cg1458 with inhibitor (see paper)
29% identity, 91% coverage: 1:274/300 of query aligns to 2:266/269 of 4dbhA
3r6oA Crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7- dioateisomerase from mycobacterium abscessus (see paper)
29% identity, 73% coverage: 49:268/300 of query aligns to 43:254/265 of 3r6oA
6v77B Crystal structure of a putative hpce protein from mycobacterium smegmatis
31% identity, 85% coverage: 19:272/300 of query aligns to 32:273/279 of 6v77B
6iymA Fumarylacetoacetate hydrolase (eafah) from psychrophilic exiguobacterium antarcticum (see paper)
34% identity, 72% coverage: 61:277/300 of query aligns to 61:277/277 of 6iymA
P76004 Oxaloacetate tautomerase YcgM; EC 5.3.2.2 from Escherichia coli (strain K12)
32% identity, 62% coverage: 67:251/300 of query aligns to 15:202/219 of P76004
6j5yA Crystal structure of fumarylpyruvate hydrolase from pseudomonas aeruginosa in complex with mn2+ and pyruvate (see paper)
33% identity, 68% coverage: 67:271/300 of query aligns to 22:227/233 of 6j5yA
Q8R0F8 Oxaloacetate tautomerase FAHD1, mitochondrial; Acylpyruvase FAHD1; Acylpyruvate hydrolase; ApH; Fumarylacetoacetate hydrolase domain-containing protein 1; Oxaloacetate decarboxylase; OAA decarboxylase; ODx; EC 5.3.2.2; EC 3.7.1.5; EC 4.1.1.112 from Mus musculus (Mouse) (see paper)
31% identity, 71% coverage: 66:279/300 of query aligns to 12:219/221 of Q8R0F8
6sbiA X-ray structure of murine fumarylacetoacetate hydrolase domain containing protein 1 (fahd1) in complex with inhibitor oxalate (see paper)
31% identity, 71% coverage: 66:279/300 of query aligns to 9:216/216 of 6sbiA
1gttA Crystal structure of hpce (see paper)
34% identity, 61% coverage: 66:247/300 of query aligns to 220:392/421 of 1gttA
Q6P587 Oxaloacetate tautomerase FAHD1, mitochondrial; Acylpyruvase FAHD1; Fumarylacetoacetate hydrolase domain-containing protein 1; FAH domain-containing protein 1; Oxaloacetate decarboxylase; OAA decarboxylase; ODx; YisK-like protein; EC 5.3.2.2; EC 3.7.1.5; EC 4.1.1.112 from Homo sapiens (Human) (see 4 papers)
32% identity, 64% coverage: 56:247/300 of query aligns to 2:194/221 of Q6P587
6fogA X-ray structure of homo sapiens fumarylacetoacetate hydrolase domain containing protein 1 (fahd1) in complex with inhibitor oxalate at 1.94a resolution. (see paper)
31% identity, 61% coverage: 66:247/300 of query aligns to 10:192/218 of 6fogA
6j5xB Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
27% identity, 80% coverage: 33:273/300 of query aligns to 39:275/280 of 6j5xB
6j5xA Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
27% identity, 80% coverage: 33:273/300 of query aligns to 39:275/280 of 6j5xA
>GFF33 FitnessBrowser__Marino:GFF33
MRIGRIGDLEGNVGWAALNPETGCARWILGAFSEWAVLASKGKLSEKNLSAEQLQAASFT
LLAPIEPGARIFGVGLNYLEHLKKLGSEAPPHPLSYLKPDSAMVGHREDVLYPAVTEQLD
YEIELVAVVARELANVQFPSSCLLGYTVGNDVSARDAGQALGRLDLFTQKAMDRTTPVGP
WIETADGVGGVGQPELHLMMTVNGQVRQQGNTRDMIFSVDEILNYLDARCVLRPGDLVFT
GSTSGVGLETGTFLKPGDLMEARIERIGVLSNSIAARRQLSCYRKQGALGAPGRSFESEI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory