Comparing GFF3307 HP15_3249 TRAP-type mannitol/chloroaromatic compound transport system, large permease component to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 95% coverage: 13:423/431 of query aligns to 11:413/427 of 8b01B
>GFF3307 HP15_3249 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
MIGMIMFGVALVMLMLGFPVAFTFGGVALFFGIFAEGMDLFAFMPYRIMSVMQNTVLMAV
PLFIFMGVVLQRTRLAEQLLTSMGRLFGGLPGGLAISTILVGALLAASTGVVGASVVAMG
LISLPVMLAHKYDKRLATGTICASGTLGQIVPPSIILIILGDVLGLPVGDLFKAAVWPGV
VLVGLYIIYILVLTRLKPETAPAMPDEPGVSRKKEVFNALLAIIPPLALIVVVLGSIFTG
IATPTESSALGGVGAVVLAIIYRQFSFKMVWDASKDTVKVTAMVFAILIGATAFSMVFSY
TGGDYLLEEWLLQLPGEKWGFIILAMVVILVLGFFIDFVEISFIIVPILAPVAEAMGINM
LWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPPGVRTTDIYKGVLPFILIQMFVLALIVI
FPEWFGMSSSY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory