SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF3307 HP15_3249 TRAP-type mannitol/chloroaromatic compound transport system, large permease component to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 95% coverage: 13:423/431 of query aligns to 11:413/427 of 8b01B

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sites
8b01B
M
 
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E
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-
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N
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A
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A
Y
 
Q
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M
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I
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G
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G
M
 
L
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D
N
 
N
T
 
F
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L
 
L
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L
A
 
A
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V
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P
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F
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T
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G
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H
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L
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M
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A
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G
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I
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T
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E
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R
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A
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A
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M
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G
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L
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N
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I
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L
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A
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S
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L
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F
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x
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A
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C
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C
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Q

Query Sequence

>GFF3307 HP15_3249 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
MIGMIMFGVALVMLMLGFPVAFTFGGVALFFGIFAEGMDLFAFMPYRIMSVMQNTVLMAV
PLFIFMGVVLQRTRLAEQLLTSMGRLFGGLPGGLAISTILVGALLAASTGVVGASVVAMG
LISLPVMLAHKYDKRLATGTICASGTLGQIVPPSIILIILGDVLGLPVGDLFKAAVWPGV
VLVGLYIIYILVLTRLKPETAPAMPDEPGVSRKKEVFNALLAIIPPLALIVVVLGSIFTG
IATPTESSALGGVGAVVLAIIYRQFSFKMVWDASKDTVKVTAMVFAILIGATAFSMVFSY
TGGDYLLEEWLLQLPGEKWGFIILAMVVILVLGFFIDFVEISFIIVPILAPVAEAMGINM
LWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPPGVRTTDIYKGVLPFILIQMFVLALIVI
FPEWFGMSSSY

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory