SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF3332 HP15_3274 thiazole synthase to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 15 hits to proteins with known functional sites (download)

O31618 Thiazole synthase; EC 2.8.1.10 from Bacillus subtilis (strain 168) (see 2 papers)
51% identity, 94% coverage: 15:266/269 of query aligns to 4:253/256 of O31618

query
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O31618
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1tygA Structure of the thiazole synthase/this complex (see paper)
51% identity, 90% coverage: 15:257/269 of query aligns to 2:242/242 of 1tygA

query
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1tygA
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Y

5z9yB Crystal structure of mycobacterium tuberculosis thiazole synthase (thig) complexed with dxp (see paper)
49% identity, 91% coverage: 15:260/269 of query aligns to 2:234/234 of 5z9yB

query
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5z9yB
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A

4n6fA Crystal structure of amycolatopsis orientalis bexx complexed with g6p (see paper)
34% identity, 90% coverage: 12:254/269 of query aligns to 1:241/242 of 4n6fA

query
sites
4n6fA
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E

Q03148 Pyridoxal 5'-phosphate synthase subunit SNZ1; PLP synthase subunit SNZ1; PDX1 homolog 1; Pdx1.1; p35; EC 4.3.3.6 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
36% identity, 20% coverage: 183:236/269 of query aligns to 196:251/297 of Q03148

query
sites
Q03148
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V

Sites not aligning to the query:

3o05A Crystal structure of yeast pyridoxal 5-phosphate synthase snz1 complxed with substrate plp (see paper)
38% identity, 20% coverage: 183:236/269 of query aligns to 182:237/261 of 3o05A

query
sites
3o05A
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G
V
 
V
L
 
F
M
 
V
N
 
G
T
 
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
S
D
 
N
P
 
P
I
 
V
R
 
R
M
 
L
A
 
A
N
 
T
A
 
A
M
 
V

Sites not aligning to the query:

Q9WYU4 Pyridoxal 5'-phosphate synthase subunit PdxS; PLP synthase subunit PdxS; Pdx1; EC 4.3.3.6 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
50% identity, 16% coverage: 199:240/269 of query aligns to 215:256/293 of Q9WYU4

query
sites
Q9WYU4
G
|
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
M
L
 
L
G
 
G
C
 
A
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
x
G
T
x
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
K
D
 
D
P
 
P
I
 
R
R
 
K
M
 
M
A
 
A
N
 
K
A
 
A
M
 
M
R
 
V
L
 
L
A
 
A
I
 
V

Sites not aligning to the query:

2issB Structure of the plp synthase holoenzyme from thermotoga maritima (see paper)
50% identity, 16% coverage: 199:240/269 of query aligns to 220:261/285 of 2issB

query
sites
2issB
G
|
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
M
L
 
L
G
 
G
C
 
A
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
x
G
T
x
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
K
D
 
D
P
 
P
I
 
R
R
 
K
M
 
M
A
 
A
N
 
K
A
 
A
M
 
M
R
 
V
L
 
L
A
 
A
I
 
V

Sites not aligning to the query:

5lntA Crystal structure of arabidopsis thaliana pdx1k166r-prei320 complex (see paper)
40% identity, 18% coverage: 199:246/269 of query aligns to 211:258/273 of 5lntA

query
sites
5lntA
G
|
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
x
F
M
 
V
N
x
G
T
x
S
A
 
G
I
 
V
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
V
R
 
K
M
 
R
A
 
A
N
 
K
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V
E
 
T
S
 
N
G
 
Y
R
 
R
E
 
D
A
 
A

Sites not aligning to the query:

5lnrA Crystal structure of arabidopsis thaliana pdx1-plp complex (see paper)
45% identity, 16% coverage: 199:240/269 of query aligns to 210:251/267 of 5lnrA

query
sites
5lnrA
G
 
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
 
G
T
 
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
A
R
 
R
M
 
R
A
 
A
N
 
R
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V

Sites not aligning to the query:

Q8L940 Pyridoxal 5'-phosphate synthase subunit PDX1.3; AtPDX1.3; AtPDX1;1; PLP synthase subunit PDX1.3; EC 4.3.3.6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
45% identity, 16% coverage: 199:240/269 of query aligns to 230:271/309 of Q8L940

query
sites
Q8L940
G
 
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
 
G
T
 
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
A
R
 
R
M
 
R
A
 
A
N
 
R
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V

Sites not aligning to the query:

5k2zB Pdx1.3-adduct (arabidopsis) (see paper)
45% identity, 16% coverage: 199:240/269 of query aligns to 211:252/278 of 5k2zB

query
sites
5k2zB
G
 
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
 
G
T
 
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
A
R
 
R
M
 
R
A
 
A
N
 
R
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V

Sites not aligning to the query:

5lnuA Crystal structure of arabidopsis thaliana pdx1-i320 complex (see paper)
45% identity, 16% coverage: 199:240/269 of query aligns to 210:251/277 of 5lnuA

query
sites
5lnuA
G
|
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
x
G
T
x
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
A
R
 
R
M
 
R
A
 
A
N
 
R
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V

Sites not aligning to the query:

5lnsA Crystal structure of arabidopsis thaliana pdx1-r5p complex (see paper)
45% identity, 16% coverage: 199:240/269 of query aligns to 210:251/275 of 5lnsA

query
sites
5lnsA
G
|
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
 
F
M
 
V
N
x
G
T
x
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
A
R
 
R
M
 
R
A
 
A
N
 
R
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V

Sites not aligning to the query:

5lnwA Crystal structure of arabidopsis thaliana pdx1-i320-g3p complex (see paper)
45% identity, 16% coverage: 199:240/269 of query aligns to 210:251/274 of 5lnwA

query
sites
5lnwA
G
 
G
V
 
V
G
 
A
T
 
T
A
 
P
S
 
A
D
 
D
A
 
A
T
 
A
I
 
L
A
 
M
M
 
M
E
 
Q
L
 
L
G
 
G
C
 
C
D
 
D
G
 
G
V
 
V
L
x
F
M
x
V
N
x
G
T
x
S
A
 
G
I
 
I
A
 
F
Q
 
K
A
 
S
K
 
G
D
 
D
P
 
P
I
 
A
R
 
R
M
 
R
A
 
A
N
 
R
A
 
A
M
 
I
R
 
V
L
 
Q
A
 
A
I
 
V

Sites not aligning to the query:

Query Sequence

>GFF3332 HP15_3274 thiazole synthase
MTETSELQLPEDKPLEIAGRVYQSRLLVGTGKYRDMMETGHAIESSGAEIVTVAVRRTNL
GQNPDEPNLLDVISPSSYTILPNTAGCYTAKDAVRTCKLARELLDGHDLVKLEVLGEEKT
LYPNMTETLVAAEELIKDGFKVMVYCSDDPLLAKRLEEMGCVAIMPLGAPIGSGLGIQNR
YNIRLIVENANVPVLVDAGVGTASDATIAMELGCDGVLMNTAIAQAKDPIRMANAMRLAI
ESGREAYLAGRMPKKLYASASSPIDGTFF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory