Comparing GFF3337 FitnessBrowser__Phaeo:GFF3337 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
30% identity, 61% coverage: 17:320/501 of query aligns to 11:310/427 of 8b01B
Sites not aligning to the query:
>GFF3337 FitnessBrowser__Phaeo:GFF3337
MTALEIGIASFPVLMMLIFLRVPIGLSMFLVGLVGLIIVTDGTQVAFGRMKSETYSTFSS
YSLTIVPMFLLMGHFATLGGMSTALFKAAEGFLGHKKGGVAMAAIGACAGFGAICGSSLA
TAATMGRVALPELRNYGYAGGFSTATLAAGGTLGILIPPSVVLVIYAILTEQNIAKLFLA
AFIPGILAAIGYVIAISIYVRVFPGSAGTRPPVPWGERFAALFHVWPVLLVFGLVVGGIY
LGWFTPTEGAAVGALGTGLIAWLNGGLNRETLTDSFMVTARSTAMIFFIVLGAGFYNGFL
ALTKVPQELADFVVSQGLSPWMVLMLILAFYLVFGCLMDSLSMILLTIPIFYPVISAMDF
GLVNLPAMQAEAAMEVLKAGVPQGMGADMLASIQEAIATGTELTREQMKELGIRVSKGMA
NRLETEYVAIWFGILVLIVVEVGLITPPVGMNLFVINAMDRTTRMVDTYKAVMFFVASDL
IRVVILVAFPIITLLPLMLMR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory