Comparing GFF3355 FitnessBrowser__Marino:GFF3355 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
35% identity, 33% coverage: 220:332/344 of query aligns to 87:199/506 of A0A0H2ZQB9
Sites not aligning to the query:
B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
27% identity, 58% coverage: 144:344/344 of query aligns to 50:257/553 of B5Z7I3
Sites not aligning to the query:
>GFF3355 FitnessBrowser__Marino:GFF3355
MATYDSLFSSLGLEQWCSEGKSSGPMSMADLLNKTKGESAEPASIWELPFPSMDALNESC
SAFPQSRELTKGLEQGFLAIKDSLSLVLDPLTQPLSWFLDGALYAMLNTPWWIVIPLLLA
VVYVVTKSWKLMLFVGGSIVLLAFIDHYDYAMQTLAIIFVCAFLCVLLGVPIGIAMARSN
SLQRMIIPVLDMLQTLPPFVYLIPLIFLFSVTESKLYGIAIILYAIVPVIRLTNLGIRLV
DKDVIEAADAFGMTPRQKLYKVQIPLALPNIMAGVNQTIMMSLAMVVIASLVSAPGLGVL
VLRGIRNLELGVGLVSGLGIVILAVILDRVTKASLARINVSQKQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory