Comparing GFF336 FitnessBrowser__Phaeo:GFF336 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
47% identity, 97% coverage: 2:411/421 of query aligns to 1:409/418 of 4xg1B
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
44% identity, 97% coverage: 2:411/421 of query aligns to 1:384/393 of 4xg1A
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
43% identity, 93% coverage: 20:411/421 of query aligns to 6:394/405 of B4XMC6
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
42% identity, 93% coverage: 20:411/421 of query aligns to 4:386/394 of 3c5qA
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
37% identity, 99% coverage: 7:421/421 of query aligns to 10:433/434 of 1tufA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
37% identity, 99% coverage: 7:421/421 of query aligns to 10:433/434 of 1twiA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
37% identity, 99% coverage: 7:421/421 of query aligns to 14:437/438 of Q58497
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
40% identity, 92% coverage: 20:405/421 of query aligns to 6:374/386 of Q9X1K5
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
40% identity, 92% coverage: 20:405/421 of query aligns to 5:373/385 of 2yxxA
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
34% identity, 98% coverage: 1:412/421 of query aligns to 1:416/422 of 6n2aA
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
33% identity, 96% coverage: 1:405/421 of query aligns to 1:408/420 of P00861
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
33% identity, 96% coverage: 3:405/421 of query aligns to 2:407/419 of 1ko0A
1knwA Crystal structure of diaminopimelate decarboxylase
33% identity, 96% coverage: 3:405/421 of query aligns to 2:407/421 of 1knwA
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
31% identity, 96% coverage: 9:413/421 of query aligns to 21:442/446 of 1hkvA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
31% identity, 96% coverage: 9:413/421 of query aligns to 22:443/447 of P9WIU7
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
30% identity, 96% coverage: 8:413/421 of query aligns to 22:440/443 of 5x7mA
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
30% identity, 96% coverage: 8:413/421 of query aligns to 22:440/442 of 5x7nA
8d5rA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- ornithine (see paper)
27% identity, 98% coverage: 4:415/421 of query aligns to 23:455/461 of 8d5rA
8d5dA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- arginine (see paper)
27% identity, 98% coverage: 4:415/421 of query aligns to 22:453/458 of 8d5dA
8d4iA Structure of y430f d-ornithine/d-lysine decarboxylase complex with putrescine (see paper)
27% identity, 98% coverage: 4:415/421 of query aligns to 23:457/462 of 8d4iA
>GFF336 FitnessBrowser__Phaeo:GFF336
MDHFLYRDGALYAEDVPVAEIAATVGTPFYLYSTATLLRHFNLFDDALKGMDHLVCYAMK
AASNQAILKTLAQAGAGMDVVSQGEYLRAKAAGVPGDRIVFSGVGKTQDEIRTALSGGIR
QFNVESEPEMDVINAVALELGVVAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARARE
VYARAASLPGLKVIGIDVHIGSQLTELAPFELAYQKVAELTEQLRADGHDIHRLDLGGGL
GIPYTRSNDTPPLPVEYGAMVQRTLGHLGCEIEIEPGRLIAGNAGIMVSKVIYVKSGEDR
DFLIIDGAMNDLIRPAMYEAYHDIVPVIEPSAGVEQRAYDIVGPVCETGDTFARHRDMPP
LEAGDLVAFRSAGAYGAVMASEYNSRPLIPEVLVNGDQFAVIRRRPDFDEMINRDTIPEW
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Lawrence Berkeley National Laboratory