Comparing GFF3407 PGA1_c34600 arginine biosynthesis bifunctional protein ArgJ to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
Q07908 Arginine biosynthesis bifunctional protein ArgJ; EC 2.3.1.35; EC 2.3.1.1 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
40% identity, 95% coverage: 21:409/409 of query aligns to 23:410/410 of Q07908
P0DJQ5 Glutamate N-acetyltransferase 2; Ornithine acetyltransferase 2; Ornithine transacetylase 2; OATase 2; EC 2.3.1.35 from Streptomyces clavuligerus (see 2 papers)
39% identity, 97% coverage: 11:407/409 of query aligns to 3:391/393 of P0DJQ5
Sites not aligning to the query:
Q04728 Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Extracellular mutant protein 40; EC 2.3.1.35; EC 2.3.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
36% identity, 97% coverage: 13:409/409 of query aligns to 28:441/441 of Q04728
Sites not aligning to the query:
2yepB Structure of an n-terminal nucleophile (ntn) hydrolase, oat2, in complex with glutamate (see paper)
43% identity, 51% coverage: 200:407/409 of query aligns to 1:211/213 of 2yepB
Sites not aligning to the query:
3it6B The crystal structure of ornithine acetyltransferase complexed with ornithine from mycobacterium tuberculosis (rv1653) at 2.4 a (see paper)
39% identity, 51% coverage: 200:409/409 of query aligns to 1:205/205 of 3it6B
2yepA Structure of an n-terminal nucleophile (ntn) hydrolase, oat2, in complex with glutamate (see paper)
36% identity, 43% coverage: 26:199/409 of query aligns to 9:173/173 of 2yepA
3it6A The crystal structure of ornithine acetyltransferase complexed with ornithine from mycobacterium tuberculosis (rv1653) at 2.4 a (see paper)
36% identity, 44% coverage: 20:199/409 of query aligns to 14:193/193 of 3it6A
>GFF3407 PGA1_c34600 arginine biosynthesis bifunctional protein ArgJ
MALPRSPLAPDHFPKLPQIAGVRFASAAAGVKYKNRTDVMLAVMDPGSAVAGVFTRSATR
SAPVLDCQAKLASNDNHTAHGAAILVNSGNSNAFTGHYGQTSVAEITRTVADITGIPAAR
VFTASTGVIGEPLPHDRIVSQIATLNDGLVATAIEDAAEAIMTTDTFAKGAGATIEVGGK
TVSIAGIAKGSGMIAPDMATMLVYIFTDAQIAQNDLQVLLSQICDRTFNCITVDSDTSTS
DSLMLCASGASGIDVTGNTDFALALENVMLDLSHQVVRDGEGATKFVEIQVTGAMNDHDA
KVHGLSIANSPLVKTAIAGEDPNWGRVVMAIGKSGAAADRDKLSISFGEVLVAEKGWVSP
DYKETDGAAEMAKPEIVIKVDLGLAEGKSTVWTCDLTHQYISINADYRS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory