Comparing GFF3421 FitnessBrowser__Marino:GFF3421 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 12 hits to proteins with known functional sites (download)
Q9LIR4 Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
54% identity, 99% coverage: 6:560/562 of query aligns to 49:607/608 of Q9LIR4
8hs0A The mutant structure of dhad v178w
54% identity, 98% coverage: 8:560/562 of query aligns to 13:569/570 of 8hs0A
P9WKJ5 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
54% identity, 98% coverage: 11:558/562 of query aligns to 18:573/575 of P9WKJ5
6ovtA Crystal structure of ilvd from mycobacterium tuberculosis (see paper)
54% identity, 98% coverage: 11:558/562 of query aligns to 5:560/562 of 6ovtA
8ej0A Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mg
39% identity, 95% coverage: 27:561/562 of query aligns to 19:554/568 of 8ej0A
8epzA Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mn
39% identity, 95% coverage: 27:561/562 of query aligns to 20:555/569 of 8epzA
B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304) (see 2 papers)
37% identity, 95% coverage: 27:561/562 of query aligns to 28:565/579 of B5ZZ34
5j85A Ser480ala mutant of l-arabinonate dehydratase (see paper)
37% identity, 95% coverage: 27:561/562 of query aligns to 25:562/576 of 5j85A
Q1JUQ1 L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense (see paper)
37% identity, 89% coverage: 27:527/562 of query aligns to 25:529/583 of Q1JUQ1
7m3kA Crystal structure of galactonate dehydratase from brucella melitensis biovar abortus 2308
34% identity, 89% coverage: 34:533/562 of query aligns to 28:541/587 of 7m3kA
Q9A9Z2 D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) (see 2 papers)
31% identity, 88% coverage: 34:529/562 of query aligns to 39:547/595 of Q9A9Z2
5oynA Crystal structure of d-xylonate dehydratase in holo-form (see paper)
31% identity, 88% coverage: 34:529/562 of query aligns to 33:541/589 of 5oynA
>GFF3421 FitnessBrowser__Marino:GFF3421
MTQDKNQDKRRKYSAPVVDGIGKSASRAMLRAVGFTDEDFKKPQIGIASTWSNLTPCNMH
INQLAEESAAGADEAGGKSLIFNTITISDGIANGTEGMKYSLVSREVIADSIETVAGCEG
FDGLVAIGGCDKNMPGCMMGLARLNRPSVFVYGGTIMPGENHTDIISVFEAVGAHARGDL
DLIEVKQIEETAIPGPGSCGGMYTANTMASAIEAMGMSLPGSSAQNAVSETKAEDCRGAG
AAVLNLLEKDIKPSDIMTRKAFENAITVVIALGGSTNAVLHLLAMASTVGVDLELEDFVE
IGKRVPVLADLRPSGHYMMSELVAIGGIQPLMKMLLDRGLLHGDCLTVTGQTLAENLADV
DPYPEGQDIIHAFDNPIKADSHLRILFGNLAPTGAVAKITGKEGTHFTGRARVFHSEEEA
QERILDGTVVAGDVLVIRYEGPKGGPGMREMLSPTSAIMGKGLGSDVALITDGRFSGGSH
GFVVGHITPEAAEGGPIALVEDGDTITIDAVSNRIELDVSDQELERRRQAWQAPPPRFTR
GTLAKYSRTVSSASKGAVTDLP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory