Comparing GFF3439 FitnessBrowser__WCS417:GFF3439 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
64% identity, 91% coverage: 26:276/276 of query aligns to 2:254/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
64% identity, 91% coverage: 26:276/276 of query aligns to 6:258/258 of P02915
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
51% identity, 89% coverage: 29:275/276 of query aligns to 4:240/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
53% identity, 89% coverage: 27:272/276 of query aligns to 4:239/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
53% identity, 89% coverage: 27:272/276 of query aligns to 4:239/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
53% identity, 89% coverage: 27:272/276 of query aligns to 4:239/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
53% identity, 89% coverage: 27:272/276 of query aligns to 4:239/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
50% identity, 90% coverage: 27:275/276 of query aligns to 3:240/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 86% coverage: 40:275/276 of query aligns to 19:245/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 86% coverage: 40:275/276 of query aligns to 20:246/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 86% coverage: 40:275/276 of query aligns to 20:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 86% coverage: 40:275/276 of query aligns to 20:246/344 of 3tuiC
Sites not aligning to the query:
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
39% identity, 82% coverage: 27:251/276 of query aligns to 2:224/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
39% identity, 82% coverage: 27:251/276 of query aligns to 2:224/230 of 1l2tA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
40% identity, 76% coverage: 35:244/276 of query aligns to 14:215/226 of 5xu1B
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
37% identity, 81% coverage: 27:250/276 of query aligns to 4:216/223 of 2pclA
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
35% identity, 88% coverage: 32:273/276 of query aligns to 32:265/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
35% identity, 88% coverage: 32:273/276 of query aligns to 32:265/382 of 7aheC
Sites not aligning to the query:
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
38% identity, 74% coverage: 27:231/276 of query aligns to 4:202/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
38% identity, 74% coverage: 27:231/276 of query aligns to 4:202/592 of 5lj7A
>GFF3439 FitnessBrowser__WCS417:GFF3439
MNQSAQALAAYPVDEPVAQPVTAAIKLQVEGIHKRYGEHEVLKGVSLNARQGDVISLIGA
SGSGKSTMLRCINFLEQPDAGVITLDGISIEMRQGRAGTRAPHQDQLQNLRTRLAMVFQH
FNLWSHMTVLENITMAPRRVLDVSAAEAEKRARMYLDKVGLPSRVADQYPAFLSGGQQQR
VAIARALAMEPEIILFDEPTSALDPELVGEVLKVIQTLAEEGRTMLMVTHEMGFARQVSS
QVLFLHQGRVEEHGDARILDQPNSERLQQFLSNRLK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory