Comparing GFF345 FitnessBrowser__WCS417:GFF345 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 12 hits to proteins with known functional sites (download)
2puzB Crystal structure of imidazolonepropionase from agrobacterium tumefaciens with bound product n-formimino-l-glutamate (see paper)
56% identity, 95% coverage: 4:385/401 of query aligns to 4:389/404 of 2puzB
2gokA Crystal structure of the imidazolonepropionase from agrobacterium tumefaciens at 1.87 a resolution (see paper)
56% identity, 95% coverage: 4:385/401 of query aligns to 4:389/404 of 2gokA
Q8U8Z6 Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see 2 papers)
56% identity, 95% coverage: 4:385/401 of query aligns to 18:403/419 of Q8U8Z6
2q09A Crystal structure of imidazolonepropionase from environmental sample with bound inhibitor 3-(2,5-dioxo-imidazolidin-4-yl)-propionic acid (see paper)
54% identity, 98% coverage: 4:394/401 of query aligns to 5:396/402 of 2q09A
2oofA The crystal structure of 4-imidazolone-5-propanoate amidohydrolase from environmental sample
54% identity, 98% coverage: 4:394/401 of query aligns to 6:397/403 of 2oofA
A0KF84 Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) (see paper)
54% identity, 98% coverage: 4:394/401 of query aligns to 11:404/411 of A0KF84
2g3fA Crystal structure of imidazolonepropionase complexed with imidazole-4- acetic acid sodium salt, a substrate homologue (see paper)
39% identity, 95% coverage: 20:399/401 of query aligns to 33:411/414 of 2g3fA
2bb0A Structure of imidazolonepropionase from bacillus subtilis (see paper)
39% identity, 95% coverage: 20:399/401 of query aligns to 32:410/413 of 2bb0A
P42084 Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis (strain 168) (see paper)
39% identity, 95% coverage: 20:399/401 of query aligns to 34:412/421 of P42084
4dzhA Crystal structure of an adenosine deaminase from xanthomonas campestris (target nysgrc-200456) with bound zn
28% identity, 41% coverage: 207:370/401 of query aligns to 188:373/439 of 4dzhA
Sites not aligning to the query:
4dykA Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn
25% identity, 45% coverage: 215:395/401 of query aligns to 195:417/437 of 4dykA
Sites not aligning to the query:
4gbdA Crystal structure of adenosine deaminase from pseudomonas aeruginosa pao1 with bound zn and methylthio-coformycin (see paper)
25% identity, 45% coverage: 215:395/401 of query aligns to 195:417/435 of 4gbdA
Sites not aligning to the query:
>GFF345 FitnessBrowser__WCS417:GFF345
MKTLWQHCHVATMAQGNYSIIEDAAMVTAGSLIEWIGPRSQVPTADYAQVHDLQGAWVTP
GLIDCHTHTVFGGNRSGEFEQRLEGVSYAEIAAKGGGIASTVRATRAATEDELFASAHKR
LRSLLRDGVTTVEIKSGYGLDLVNERKMLRVARRLGEALPVSVRATCLAAHALPPEYKDR
ADDYIDHICVEMLPALAAEGLVDAVDAFCEYLAFSTEQVERVFKVAQQLGLPVKLHAEQL
SSLHGSSLAARYQALSADHLEFMTEDDAIAMAASGTVAVLLPGAFYFLRETQLPPMDALR
KHGVKIAIASDLNPGTSPALSVRLMLNMACTLFRMTPEEALAGATQHAATALGMGDTHGS
LEAGKVADFVAWQIDRPADLAYWLGGELDKRVVRHGVDVTV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory