Comparing GFF356 FitnessBrowser__WCS417:GFF356 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3c4jA Abc protein artp in complex with atp-gamma-s
61% identity, 100% coverage: 1:244/244 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
61% identity, 100% coverage: 1:244/244 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
61% identity, 100% coverage: 1:244/244 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
61% identity, 100% coverage: 1:244/244 of query aligns to 3:242/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
61% identity, 100% coverage: 1:244/244 of query aligns to 2:240/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
59% identity, 100% coverage: 1:244/244 of query aligns to 1:240/240 of 4ymuJ
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
51% identity, 98% coverage: 2:241/244 of query aligns to 3:250/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
51% identity, 98% coverage: 2:241/244 of query aligns to 7:254/258 of P02915
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
41% identity, 100% coverage: 1:244/244 of query aligns to 1:245/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
41% identity, 100% coverage: 1:244/244 of query aligns to 2:246/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
41% identity, 100% coverage: 1:244/244 of query aligns to 2:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
41% identity, 100% coverage: 1:244/244 of query aligns to 2:246/344 of 3tuiC
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
38% identity, 93% coverage: 1:227/244 of query aligns to 3:226/230 of 6z4wA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
38% identity, 93% coverage: 1:227/244 of query aligns to 3:226/229 of 6z67B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
39% identity, 89% coverage: 1:218/244 of query aligns to 1:223/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
38% identity, 89% coverage: 1:218/244 of query aligns to 1:223/230 of 1l2tA
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
37% identity, 98% coverage: 1:240/244 of query aligns to 4:243/375 of 2d62A
3d31A Modbc from methanosarcina acetivorans (see paper)
34% identity, 98% coverage: 1:240/244 of query aligns to 1:228/348 of 3d31A
Sites not aligning to the query:
1g291 Malk (see paper)
36% identity, 96% coverage: 7:240/244 of query aligns to 6:240/372 of 1g291
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 100% coverage: 1:243/244 of query aligns to 17:251/378 of P69874
Sites not aligning to the query:
>GFF356 FitnessBrowser__WCS417:GFF356
MIEVRDLVKVFDTRGHVVRAVDNVTTQVAKGEVLVVIGPSGSGKSTFLRCLNGLEEFDSG
SVSIDGLQLADPKTDVNAYRREVGMVFQHFNLFPHMTVLENLCLAQKVVRKRSKKESEAK
ALALLEKVGIAQKANEFPSRLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEMVGEVL
DVMKTLALEGMTMVCVTHEMGFAREVADRVLFFDHGKLLEDAAPAEFFDAPKDPRAQAFL
RQVL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory