Comparing GFF3588 FitnessBrowser__psRCH2:GFF3588 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
30% identity, 51% coverage: 83:223/275 of query aligns to 293:455/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
30% identity, 51% coverage: 83:223/275 of query aligns to 278:440/490 of 4ki0F
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
27% identity, 85% coverage: 28:262/275 of query aligns to 27:285/296 of P68183
>GFF3588 FitnessBrowser__psRCH2:GFF3588
MLSPYMSPVERAWYYALRILCALVLLFLIVPVLVIVPLSFNSGSFLVYPLQGFSMRWYEA
LFSSADWMRSLKNSMLIAPAATFLAVVLGTLAAVGLTRAEFRGKALLMTILISPMVVPVV
IIGVASYLFFAPLGMGNSYLSLILVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGASP
LTAFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQITLPRQMFSGIRENLSPT
IAAAATLLIGFSIALLLTLEWLRGRAEKLRTQQPA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory