Comparing GFF363 FitnessBrowser__psRCH2:GFF363 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4gncA Human smp30/gnl-1,5-ag complex (see paper)
33% identity, 97% coverage: 4:290/296 of query aligns to 4:291/298 of 4gncA
3g4hA Crystal structure of human senescence marker protein-30 (zinc bound) (see paper)
33% identity, 97% coverage: 4:290/296 of query aligns to 3:290/297 of 3g4hA
Q15493 Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens (Human) (see 2 papers)
33% identity, 97% coverage: 4:290/296 of query aligns to 5:292/299 of Q15493
4gnaA Mouse smp30/gnl-xylitol complex (see paper)
32% identity, 99% coverage: 4:296/296 of query aligns to 3:296/297 of 4gnaA
4gn9A Mouse smp30/gnl-glucose complex (see paper)
32% identity, 99% coverage: 4:296/296 of query aligns to 3:296/297 of 4gn9A
4gn8A Mouse smp30/gnl-1,5-ag complex (see paper)
32% identity, 99% coverage: 4:296/296 of query aligns to 3:296/297 of 4gn8A
4gn7A Mouse smp30/gnl (see paper)
32% identity, 99% coverage: 4:296/296 of query aligns to 3:296/297 of 4gn7A
Q9A9Z1 D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) (see paper)
31% identity, 98% coverage: 1:289/296 of query aligns to 1:280/289 of Q9A9Z1
7pldB Caulobacter crescentus xylonolactonase with (r)-4-hydroxy-2- pyrrolidone (see paper)
31% identity, 97% coverage: 2:289/296 of query aligns to 2:280/289 of 7pldB
7plbB Caulobacter crescentus xylonolactonase with d-xylose (see paper)
31% identity, 97% coverage: 2:289/296 of query aligns to 2:280/289 of 7plbB
5gx1A Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 1.1 mgy (1st measurement) (see paper)
29% identity, 88% coverage: 5:264/296 of query aligns to 4:270/307 of 5gx1A
5d9bA Luciferin-regenerating enzyme solved by siras using xfel (refined against native data) (see paper)
29% identity, 88% coverage: 5:264/296 of query aligns to 4:270/307 of 5d9bA
3dr2A Structural and functional analyses of xc5397 from xanthomonas campestris: a gluconolactonase important in glucose secondary metabolic pathways (see paper)
28% identity, 83% coverage: 17:263/296 of query aligns to 45:288/299 of 3dr2A
7rizA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound 2-hydroxyquinoline (see paper)
28% identity, 54% coverage: 104:263/296 of query aligns to 120:282/306 of 7rizA
Sites not aligning to the query:
8dk0A Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound (s)gamma- valerolactone (see paper)
26% identity, 54% coverage: 104:263/296 of query aligns to 115:269/293 of 8dk0A
Sites not aligning to the query:
8djzA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound product (see paper)
26% identity, 54% coverage: 104:263/296 of query aligns to 115:269/293 of 8djzA
Sites not aligning to the query:
8djfA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound tetrahedral intermediate (see paper)
26% identity, 54% coverage: 104:263/296 of query aligns to 115:269/293 of 8djfA
Sites not aligning to the query:
7risA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound phosphate (see paper)
27% identity, 54% coverage: 104:263/296 of query aligns to 111:269/293 of 7risA
Sites not aligning to the query:
2gvvA Structure of diisopropyl fluorophosphatase (dfpase) in complex with dicyclopentylphosphoroamidate (dcppa) (see paper)
26% identity, 67% coverage: 67:264/296 of query aligns to 84:284/309 of 2gvvA
Sites not aligning to the query:
3o4pA Dfpase at 0.85 angstrom resolution (h atoms included) (see paper)
26% identity, 67% coverage: 67:264/296 of query aligns to 86:286/314 of 3o4pA
Sites not aligning to the query:
>GFF363 FitnessBrowser__psRCH2:GFF363
MASEAELIVDLGCATGESPVWVAAEQALYWVDIPNRELLRWNAADGQISRWQGDEMLACI
ARHGDGWVAGMESGFFSLQTRPDGRLDSHLLATIDHQLPAMRMNDGRCDREGRFWAGSMA
LDMAAGHPVGALYRLDSKSIDAPLVPQLDGFIVPNGLAFSPDGRTMYLSDSHPSVQKIWA
FDYDIDSGTPSRRRLFVDMLDHPGRPDGAAVDADGCYWICGNDAGFIHRFTPDGRLDRSL
AVPVKKPSMCAFGGARLDTLFVTSIRPGGDLSDQPLAGGVFALNPGVTGLEEPAFS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory