Comparing GFF3630 FitnessBrowser__Phaeo:GFF3630 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
35% identity, 89% coverage: 32:327/332 of query aligns to 20:321/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
35% identity, 89% coverage: 32:327/332 of query aligns to 19:310/310 of 4fwiB
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 76% coverage: 28:278/332 of query aligns to 13:260/343 of P30750
Sites not aligning to the query:
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
32% identity, 97% coverage: 4:324/332 of query aligns to 2:323/330 of P0AAH4
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
37% identity, 76% coverage: 28:278/332 of query aligns to 14:261/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
37% identity, 76% coverage: 28:278/332 of query aligns to 14:261/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
37% identity, 76% coverage: 28:278/332 of query aligns to 14:261/344 of 6cvlD
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
37% identity, 69% coverage: 34:262/332 of query aligns to 17:246/250 of 7z18I
Sites not aligning to the query:
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
37% identity, 69% coverage: 34:262/332 of query aligns to 17:246/253 of 7z15I
Sites not aligning to the query:
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
36% identity, 69% coverage: 34:262/332 of query aligns to 17:246/250 of 7z16I
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
35% identity, 71% coverage: 25:260/332 of query aligns to 32:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
35% identity, 71% coverage: 25:260/332 of query aligns to 32:263/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
36% identity, 70% coverage: 25:255/332 of query aligns to 32:258/260 of 7ahdC
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 67% coverage: 39:260/332 of query aligns to 36:248/378 of P69874
Sites not aligning to the query:
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 78% coverage: 28:287/332 of query aligns to 14:267/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 78% coverage: 28:287/332 of query aligns to 14:267/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 78% coverage: 28:287/332 of query aligns to 14:267/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
32% identity, 78% coverage: 28:287/332 of query aligns to 14:267/353 of Q97UY8
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
37% identity, 68% coverage: 36:261/332 of query aligns to 18:237/241 of 4u00A
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
35% identity, 73% coverage: 21:261/332 of query aligns to 3:239/242 of 3c4jA
>GFF3630 FitnessBrowser__Phaeo:GFF3630
MTHPVMEIDDLSLTFQLPRSLVDVIRKQPGRAVRALNGVSLALQKGETLGVVGESGCGKS
TLARCIVRLYQPQGGSIRHHGQDIFAEGARRDRSYNRRVQMMFQDPYSSLNPRMTCGQIL
SEALHVHKMRPADEIPARVEELLELVRLPADAAQKLPHEFSGGQRQRIAIARALAVEPEV
LIADELVSALDVSVQAQVVNLLLELQEQLDLTILFVAHDLRLVRHVSHRVAVIYLGRIVE
IGDSETLFANPAHPYSQALLSAAPSLDPDDTGDAIRLEGELPSPLNVPPGCPFHVRCAHA
ADVCRRDVPRLRPLGDRGEVACHLAEEISQNA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory