Comparing GFF3695 FitnessBrowser__WCS417:GFF3695 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8uw6B Acetylornithine deacetylase from escherichia coli, di-zinc form. (see paper)
33% identity, 93% coverage: 19:377/385 of query aligns to 28:375/381 of 8uw6B
Sites not aligning to the query:
5vo3A Crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) (see paper)
32% identity, 54% coverage: 51:257/385 of query aligns to 54:262/380 of 5vo3A
Sites not aligning to the query:
P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 3 papers)
32% identity, 54% coverage: 51:257/385 of query aligns to 50:258/377 of P44514
Sites not aligning to the query:
4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril (see paper)
31% identity, 51% coverage: 60:257/385 of query aligns to 58:258/375 of 4pqaA
Sites not aligning to the query:
4o23A Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
31% identity, 51% coverage: 60:257/385 of query aligns to 58:258/376 of 4o23A
7lgpB Dape enzyme from shigella flexneri
27% identity, 85% coverage: 51:378/385 of query aligns to 52:373/377 of 7lgpB
3pfoA Crystal structure of a putative acetylornithine deacetylase (rpa2325) from rhodopseudomonas palustris cga009 at 1.90 a resolution
28% identity, 54% coverage: 64:272/385 of query aligns to 99:308/426 of 3pfoA
Sites not aligning to the query:
7uoiA Crystallographic structure of dape from enterococcus faecium (see paper)
23% identity, 98% coverage: 6:381/385 of query aligns to 13:383/383 of 7uoiA
7t1qA Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
31% identity, 54% coverage: 51:257/385 of query aligns to 50:258/377 of 7t1qA
Sites not aligning to the query:
Q8P8J5 N-acetyl-L-citrulline deacetylase; ACDase; Acetylcitrulline deacetylase; EC 3.5.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see paper)
25% identity, 97% coverage: 5:378/385 of query aligns to 10:363/366 of Q8P8J5
P37111 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Sus scrofa (Pig) (see paper)
27% identity, 70% coverage: 6:276/385 of query aligns to 15:294/407 of P37111
Sites not aligning to the query:
4h2kA Crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae (see paper)
40% identity, 30% coverage: 51:166/385 of query aligns to 52:170/258 of 4h2kA
Sites not aligning to the query:
3rzaA Crystal structure of a tripeptidase (sav1512) from staphylococcus aureus subsp. Aureus mu50 at 2.10 a resolution
24% identity, 99% coverage: 1:382/385 of query aligns to 3:372/373 of 3rzaA
2f7vA Structure of acetylcitrulline deacetylase complexed with one co (see paper)
24% identity, 97% coverage: 5:378/385 of query aligns to 11:358/360 of 2f7vA
5xoyA Crystal structure of lysk from thermus thermophilus in complex with lysine (see paper)
29% identity, 85% coverage: 57:382/385 of query aligns to 53:339/341 of 5xoyA
Q03154 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Homo sapiens (Human) (see 6 papers)
27% identity, 55% coverage: 64:274/385 of query aligns to 75:293/408 of Q03154
Sites not aligning to the query:
7m6uB Crystal structure of a circular permutation and computationally designed pro-enzyme of carboxypeptidase g2 (see paper)
28% identity, 60% coverage: 51:281/385 of query aligns to 4:222/392 of 7m6uB