Comparing GFF3696 FitnessBrowser__Phaeo:GFF3696 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
35% identity, 90% coverage: 33:341/344 of query aligns to 10:323/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
35% identity, 89% coverage: 33:339/344 of query aligns to 9:310/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
30% identity, 95% coverage: 10:335/344 of query aligns to 2:322/330 of P0AAH4
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 75% coverage: 41:299/344 of query aligns to 14:267/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 75% coverage: 41:299/344 of query aligns to 14:267/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 75% coverage: 41:299/344 of query aligns to 14:267/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
31% identity, 75% coverage: 41:299/344 of query aligns to 14:267/353 of Q97UY8
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 73% coverage: 43:292/344 of query aligns to 16:260/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 73% coverage: 43:292/344 of query aligns to 17:261/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 73% coverage: 43:292/344 of query aligns to 17:261/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 73% coverage: 43:292/344 of query aligns to 17:261/344 of 6cvlD
Sites not aligning to the query:
1g291 Malk (see paper)
32% identity, 68% coverage: 45:277/344 of query aligns to 16:244/372 of 1g291
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
32% identity, 68% coverage: 45:277/344 of query aligns to 19:247/375 of 2d62A
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
30% identity, 78% coverage: 9:278/344 of query aligns to 1:249/253 of 7z15I
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
30% identity, 78% coverage: 9:278/344 of query aligns to 1:249/250 of 7z18I
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
32% identity, 67% coverage: 47:275/344 of query aligns to 19:237/393 of P9WQI3
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
32% identity, 68% coverage: 44:276/344 of query aligns to 13:239/240 of 4ymuJ
Sites not aligning to the query:
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
30% identity, 78% coverage: 9:278/344 of query aligns to 1:249/250 of 7z16I
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
30% identity, 69% coverage: 38:273/344 of query aligns to 32:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
30% identity, 69% coverage: 38:273/344 of query aligns to 32:263/382 of 7aheC
Sites not aligning to the query:
>GFF3696 FitnessBrowser__Phaeo:GFF3696
MTTQTQDSKPLLELKNLEKRFELDKGFLETIKLRGGRITREKRAVHAVNNVSLSADRGEA
LCIVGESGCGKSTVARLVAGLLAPSGGEIHYDGERIDDRSRGEMMPLRKKMQMIFQNPYA
SLNPRMTIQQALEEPVRHHNPSLSRGEVRDKVSEVMRSVGVDPSWSSRYPHEFSGGQRQR
IAIARALTVDPEFIIADEPISALDVSIQAQVLNLMLEAKDQRGLTYFFITHDLSVVEHFG
TRVAVLYLGTLCELADTQTLFENPKHPYTKALLSAVPQLKDQGQNHIRLQGEIPTPINLP
QGCPFQTRCAFANARCRESRPRPLRQADGSTVACHAVEENRLNS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory