Comparing GFF3716 FitnessBrowser__WCS417:GFF3716 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
3nojA The structure of hmg/cha aldolase from the protocatechuate degradation pathway of pseudomonas putida (see paper)
37% identity, 68% coverage: 53:203/221 of query aligns to 56:208/235 of 3nojA
A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) (see paper)
36% identity, 69% coverage: 53:205/221 of query aligns to 57:211/238 of A5W059
1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
35% identity, 48% coverage: 66:172/221 of query aligns to 46:154/156 of 1nxjA
Sites not aligning to the query:
2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
37% identity, 53% coverage: 55:172/221 of query aligns to 33:151/158 of 2yjvC
>GFF3716 FitnessBrowser__WCS417:GFF3716
MSLPGSRILPNAPMAPAELVEAFAQVVTPHISDNLGRHIGARGLTRYNRSGKLVGTAITV
KTRPGDNLLIYKAMSLLQPGHVLVVDGQGDTNNAVIGELVKLYAQQRGCVGFVIDGAIRD
VASFDDTPCYARAVVHTGPYKTGPGEVNVPVSIGGMLVNPGDLVVGDEDGLVAFSQADAA
EVLRRAAQHAEHEEAVKAEIASGAVRQSWIDKVLDHAGLAP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory