Comparing GFF376 Psest_0377 galactarate dehydratase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
55% identity, 97% coverage: 17:521/521 of query aligns to 7:460/460 of 6u7lA
>GFF376 Psest_0377 galactarate dehydratase
MSETVQLIPHQDSPRCIRLNEADNVAVVVNDGGVPVGAQFEGGLVTVEAVPQSHKVALVD
IGEGEPVRRYGQIIGYALEPIRCGSWVKETQLKMPSAPPLESLPRATAVPDKLAPLDGYT
FEGFRNSDGTVGTRNILGISTTVQCVTGVLEHAVKRIRDELLPKYPNVDDVVALTHSYGC
GVAINARDAYIPIRTVRNLARNPNLGGEALVISLGCEKLQAEQVMHEGDPSVDLREPWLY
RLQESNSGFGEMIEQIMALAETRLKKLDQRRRETVPASELILGMQCGGSDAFSGITANPA
LGYAADLLVRAGATVMFSENTEVRDAVYMLTARAETPEVADALIAEMDWYDRYLERGAAD
RSANTTPGNKKGGLSNIVEKSLGSIVKSGSGAISGVVGPGGRVARKGLIFCATPASDFVC
GTLQLAAGMNLHVFTTGRGTPYGLAMAPVVKVATRTELAERWPDLIDIDAGRIASGRASI
EELGWELFHYYLDVASGRRKTWAEQHRLHNDLVLFNPAPIT
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory