Comparing GFF3802 FitnessBrowser__psRCH2:GFF3802 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 19 hits to proteins with known functional sites (download)
3v77A Crystal structure of a putative fumarylacetoacetate isomerase/hydrolase from oleispira antarctica (see paper)
62% identity, 89% coverage: 15:210/221 of query aligns to 11:209/224 of 3v77A
Q6P587 Acylpyruvase FAHD1, mitochondrial; Fumarylacetoacetate hydrolase domain-containing protein 1; FAH domain-containing protein 1; Oxaloacetate decarboxylase; OAA decarboxylase; YisK-like protein; EC 3.7.1.5; EC 4.1.1.112 from Homo sapiens (Human) (see 3 papers)
38% identity, 93% coverage: 15:220/221 of query aligns to 14:219/224 of Q6P587
6fogA X-ray structure of homo sapiens fumarylacetoacetate hydrolase domain containing protein 1 (fahd1) in complex with inhibitor oxalate at 1.94a resolution. (see paper)
38% identity, 93% coverage: 15:220/221 of query aligns to 9:214/218 of 6fogA
6sbiA X-ray structure of murine fumarylacetoacetate hydrolase domain containing protein 1 (fahd1) in complex with inhibitor oxalate (see paper)
40% identity, 87% coverage: 15:206/221 of query aligns to 8:199/216 of 6sbiA
1nkqA Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein
42% identity, 87% coverage: 19:211/221 of query aligns to 10:223/247 of 1nkqA
6j5yA Crystal structure of fumarylpyruvate hydrolase from pseudomonas aeruginosa in complex with mn2+ and pyruvate (see paper)
35% identity, 98% coverage: 6:221/221 of query aligns to 15:231/233 of 6j5yA
8gstC Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Pyruvate bound-form) (see paper)
35% identity, 90% coverage: 17:215/221 of query aligns to 70:275/290 of 8gstC
8gsrA Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) (see paper)
35% identity, 90% coverage: 17:215/221 of query aligns to 70:275/290 of 8gsrA
3qdfA Crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from mycobacterium marinum (see paper)
33% identity, 92% coverage: 19:221/221 of query aligns to 63:248/252 of 3qdfA
8sutA Crystal structure of yisk from bacillus subtilis in complex with reaction product 4-hydroxy-2-oxoglutaric acid (see paper)
31% identity, 88% coverage: 12:206/221 of query aligns to 87:287/303 of 8sutA
8skyB Crystal structure of yisk from bacillus subtilis in complex with oxalate (see paper)
31% identity, 88% coverage: 12:206/221 of query aligns to 86:286/303 of 8skyB
6iymA Fumarylacetoacetate hydrolase (eafah) from psychrophilic exiguobacterium antarcticum (see paper)
32% identity, 94% coverage: 14:220/221 of query aligns to 65:274/277 of 6iymA
4dbhA Crystal structure of cg1458 with inhibitor (see paper)
33% identity, 92% coverage: 19:221/221 of query aligns to 63:267/269 of 4dbhA
6j5xB Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
30% identity, 92% coverage: 19:221/221 of query aligns to 69:277/280 of 6j5xB
6j5xA Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
30% identity, 92% coverage: 19:221/221 of query aligns to 69:277/280 of 6j5xA
1gttA Crystal structure of hpce (see paper)
32% identity, 83% coverage: 15:198/221 of query aligns to 220:392/421 of 1gttA
6jvwB Crystal structure of maleylpyruvate hydrolase from sphingobium sp. Syk-6 in complex with manganese (ii) ion and pyruvate (see paper)
30% identity, 91% coverage: 11:212/221 of query aligns to 71:254/264 of 6jvwB
6v77B Crystal structure of a putative hpce protein from mycobacterium smegmatis
31% identity, 97% coverage: 8:221/221 of query aligns to 61:276/279 of 6v77B
3r6oA Crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7- dioateisomerase from mycobacterium abscessus (see paper)
33% identity, 86% coverage: 10:198/221 of query aligns to 56:231/265 of 3r6oA
>GFF3802 FitnessBrowser__psRCH2:GFF3802
MSYQHHYTDGTPIHYPLGKVVCIGRNYAEHAKELNNPVPTEPLLFIKAGSCSVPLDDGFS
IPSDRGAVHYEAEIAVLIGKPLSRKPNEEEVRDAISGFAPALDLTLRDVQAKLKEKGHPW
EIAKSFDGACVLAPFVPGDAVEDLGDIGIRLTINGEVRQDGNSSQMLNAILPLLQHIAGH
FSLQPGDVVLTGTPAGVGPLKQGDQLVLELVGLSRFDSRVL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory