Comparing GFF3807 FitnessBrowser__WCS417:GFF3807 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
P54955 N-acetylcysteine deacetylase; S-(2-succino)cysteine metabolism operon protein P; EC 3.5.1.- from Bacillus subtilis (strain 168)
38% identity, 90% coverage: 42:442/448 of query aligns to 4:376/380 of P54955
O04373 IAA-amino acid hydrolase ILR1-like 4; jasmonoyl-L-amino acid hydrolase; EC 3.5.1.-; EC 3.5.1.127 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
39% identity, 88% coverage: 48:442/448 of query aligns to 48:423/440 of O04373
4ewtA The crystal structure of a putative aminohydrolase from methicillin resistant staphylococcus aureus (see paper)
33% identity, 91% coverage: 34:442/448 of query aligns to 2:388/389 of 4ewtA
P54968 IAA-amino acid hydrolase ILR1; EC 3.5.1.- from Arabidopsis thaliana (Mouse-ear cress) (see paper)
34% identity, 95% coverage: 18:442/448 of query aligns to 20:427/442 of P54968
6slfA Nalpha-acylglutamine aminoacylase from corynebacterium sp.Releasing human axilla odorants co-crystallised with high affinity inhibitor (see paper)
32% identity, 79% coverage: 33:388/448 of query aligns to 1:343/398 of 6slfA
Sites not aligning to the query:
3ramA Crystal structure of hmra (see paper)
26% identity, 60% coverage: 34:303/448 of query aligns to 4:234/391 of 3ramA
Sites not aligning to the query:
3rzaA Crystal structure of a tripeptidase (sav1512) from staphylococcus aureus subsp. Aureus mu50 at 2.10 a resolution
24% identity, 67% coverage: 48:349/448 of query aligns to 2:287/373 of 3rzaA
Sites not aligning to the query:
>GFF3807 FitnessBrowser__WCS417:GFF3807
MRLTGLTPPWVFGVLCGVASSAAIAASSGQDSAREEIAAQAKALEPAMLETRRDIHAHPE
LGNTETRTAELVAKQLRDLGLEVKTGVARTGVVAVLKGALPGPTVALRADMDALPVKEVA
DLPFASKAKGTYLGKEVDVMHACGHDAHVAILLSTAKILTGMRERLPGTVEFYFQPAEEG
PSDFIPDGKNTWGAKMMVQEGVMQSPKPDAVFGLHVWAGVPAGQIAYRSGPTLASSDDLR
IKILGKQTHAGRPWDGIDPITVGAQTIVGLQTVVSRRTDISSFPSVVSIGTINGGTRYNI
IPESMDMSGTIRSYDYGIRQKLHADVRQTVEKIAESGGAKAEVTIIEKYDPTINNPALTE
KMLPSLRWAAKDDVVQGPLVGGAEDFSFYAKEAPGLFVFLGVTPRDQDMSKAAPNHNPGF
FVDESALVVGVRTLASLATDYLYARQPQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory