Comparing GFF3829 FitnessBrowser__Phaeo:GFF3829 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
30% identity, 97% coverage: 6:388/395 of query aligns to 10:383/384 of 1o4sB
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
29% identity, 90% coverage: 28:383/395 of query aligns to 20:378/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
29% identity, 90% coverage: 28:383/395 of query aligns to 20:378/388 of 1gd9A
1j32A Aspartate aminotransferase from phormidium lapideum
29% identity, 91% coverage: 24:383/395 of query aligns to 22:380/388 of 1j32A
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
29% identity, 96% coverage: 3:383/395 of query aligns to 1:378/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
29% identity, 96% coverage: 3:383/395 of query aligns to 1:378/382 of 1bjwA
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
29% identity, 96% coverage: 3:383/395 of query aligns to 1:378/385 of Q56232
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
29% identity, 96% coverage: 3:383/395 of query aligns to 1:378/382 of 1b5oA
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
29% identity, 96% coverage: 3:383/395 of query aligns to 1:378/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
29% identity, 96% coverage: 3:383/395 of query aligns to 1:378/382 of 1gc3A
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
27% identity, 93% coverage: 24:389/395 of query aligns to 21:370/370 of Q58097
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
25% identity, 90% coverage: 34:389/395 of query aligns to 37:397/402 of P14909
Sites not aligning to the query:
2o0rA The three-dimensional structure of n-succinyldiaminopimelate aminotransferase from mycobacterium tuberculosis (see paper)
32% identity, 91% coverage: 26:383/395 of query aligns to 16:380/385 of 2o0rA
Sites not aligning to the query:
1v2fA Crystal structure of t.Th hb8 glutamine aminotransferase complex with 3-phenylpropionate (see paper)
33% identity, 88% coverage: 35:383/395 of query aligns to 28:364/368 of 1v2fA
Sites not aligning to the query:
1v2eA Crystal structure of t.Th hb8 glutamine aminotransferase complex with a-keto-g-methylthiobutyrate (see paper)
33% identity, 88% coverage: 35:383/395 of query aligns to 28:364/368 of 1v2eA
Sites not aligning to the query:
P58350 Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
27% identity, 92% coverage: 27:391/395 of query aligns to 36:410/410 of P58350
6f35A Crystal structure of the aspartate aminotranferase from rhizobium meliloti (see paper)
27% identity, 92% coverage: 27:391/395 of query aligns to 26:400/400 of 6f35A
5yhvB Crystal structure of an aminotransferase from mycobacterium tuberculosis
29% identity, 92% coverage: 19:383/395 of query aligns to 17:380/387 of 5yhvB
5yhvA Crystal structure of an aminotransferase from mycobacterium tuberculosis
29% identity, 92% coverage: 19:383/395 of query aligns to 24:387/394 of 5yhvA
P96847 Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
29% identity, 92% coverage: 19:383/395 of query aligns to 18:381/388 of P96847
>GFF3829 FitnessBrowser__Phaeo:GFF3829
MRMTDVTRRLAGLGGAKWEVHLTAREMIAAGADIIEMTIGEPDVPTPEALMQTAGAAMMA
GRTGYSDGRGEANLRQTLAERYSASTGRAIGPDNVLCFPGTQTALYAVLMGVAEHGDEVL
VGDPMYATYEGVIRASGADMVPVPLRPEHGFRMQANDIAEKITPRSRAILLTTPHNPTGS
ILTVEDLDAIGRLADVHDLWIISDEVYEQLVFDAAEFVSPLARAAFADRVIVVSSISKSH
AAPGFRSGWCIASKAFCDGLLPLSETMLFGNQPFIADMTEQAVREGSPVAEGMRARFAAR
AAKLAERLHRDTALRVHSPEAGMFAMINVAATGLDGDAYAQDLLHSAGVAVMPGSSFGES
LRGWVRVALTIEDDAFDRALTRIVDHANRTSTEVA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory