Comparing GFF3834 PGA1_262p02380 putative histidine transport system permease protein HisM to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
30% identity, 84% coverage: 38:254/258 of query aligns to 11:214/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
30% identity, 84% coverage: 38:253/258 of query aligns to 11:213/214 of 4ymwC
>GFF3834 PGA1_262p02380 putative histidine transport system permease protein HisM
MTSFKSLTQPHRLVLIALFAALVVWCAVSLRWDWIPTYAPLALEGLWTTIWILVVTSILG
FALAVPLGLAQAVGPWYLSTPARIFCTVIRGTPLLLQIWLLYYGLGSLFPQFPWIRSSEL
WPYLRQAWPYAVLALTLSYAGYEGEVMRGAFSGVAKGQLEAAKAYGMPRLTMFRRIWLPQ
AVRNVLPTLGGETILQLKATPLVATITVLDIYAVSSRVRSDTFIVYEPLLLLALVYMAIA
GVITLAFKRFEDRVPQRR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory