Comparing GFF3856 HP15_3797 TRAP-type mannitol/chloroaromatic compound transport system, large permease component to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 83% coverage: 74:451/454 of query aligns to 53:421/427 of 8b01B
>GFF3856 HP15_3797 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
MELETLFVIGMFLTFGALLMTGYPVAWVLGGTAVIWTVVGVVAVENFGANLWFDYQSSMG
LVPERIWKVVSSETLVALPMFIFMGIMLDQSGVAERLMNSMVKLFGAVRGGYAVTVIVIG
VLLAATTGIIGASVVLLGMLSLPVMMENKYDKGFAVGTACATGTLGILIPPSIMLVLMAD
RLAVPEASVGDLFMGAFFPGLMLGAMYVAYAIIRPMLQPNIAPVPEGTEKVSWAIVWEVA
KAVVPTAALILGVLGSIFAGIATPTEASGVGALGALLLALMSGRLNLNVLNSSMQQTTRT
AAFIFAIFLGATAFSVVLRGLGGDQVIEDALLGLPFGPYGVVLTILFGVFLLGFFLDWVE
ITLIILPLVAPVVQSLGFDLVWFTILFAMCLQTSFLTPPVGFALFYIKGVAPPEIKVTDI
YRGVIPFIIIQLAALAIVFVVPEIATWLPSVAYD
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory