SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF3856 HP15_3797 TRAP-type mannitol/chloroaromatic compound transport system, large permease component to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 83% coverage: 74:451/454 of query aligns to 53:421/427 of 8b01B

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sites
8b01B
T
 
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A
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P
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F
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E
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A
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G
G
 
S
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L
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G
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H
T
 
V
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N
I
 
I
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L
I
 
A
G
 
S
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L
L
 
L
L
 
F
A
x
S
A
 
G
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M
T
x
S
G
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G
I
 
S
I
 
A
G
 
L
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A
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D
V
 
A
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G
L
 
G
L
 
L
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G
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Q
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L
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E
L
 
I
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K
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S
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M
M
 
R
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D
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A
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K
Y
 
Y
D
 
D
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D
G
 
D
F
 
F
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A
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G
G
 
G
T
 
L
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T
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A
A
 
A
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S
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C
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I
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I
G
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G
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P
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L
I
x
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P
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Y
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-
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L
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A
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G
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A
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L
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C
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C
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A
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E
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A
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A
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F
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I
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I
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I
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G
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I
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A
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I
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L
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Y
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A
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L
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F
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L
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V
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S
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L
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T
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T
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V
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V
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A
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L
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M
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M
G
 
G
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F
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W
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A
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R
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E
G
 
Q
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P
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Q
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Q
I
 
L
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A
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E
A
 
L
L
 
F
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L
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S
L
 
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D
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N
P
 
P
Y
 
L
G
 
I
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L
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L
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L
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L
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I
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N
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L
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L
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L
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L
G
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G
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T
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F
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L

Query Sequence

>GFF3856 HP15_3797 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
MELETLFVIGMFLTFGALLMTGYPVAWVLGGTAVIWTVVGVVAVENFGANLWFDYQSSMG
LVPERIWKVVSSETLVALPMFIFMGIMLDQSGVAERLMNSMVKLFGAVRGGYAVTVIVIG
VLLAATTGIIGASVVLLGMLSLPVMMENKYDKGFAVGTACATGTLGILIPPSIMLVLMAD
RLAVPEASVGDLFMGAFFPGLMLGAMYVAYAIIRPMLQPNIAPVPEGTEKVSWAIVWEVA
KAVVPTAALILGVLGSIFAGIATPTEASGVGALGALLLALMSGRLNLNVLNSSMQQTTRT
AAFIFAIFLGATAFSVVLRGLGGDQVIEDALLGLPFGPYGVVLTILFGVFLLGFFLDWVE
ITLIILPLVAPVVQSLGFDLVWFTILFAMCLQTSFLTPPVGFALFYIKGVAPPEIKVTDI
YRGVIPFIIIQLAALAIVFVVPEIATWLPSVAYD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory