Comparing GFF3859 FitnessBrowser__Marino:GFF3859 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
6g3uA Structure of pseudomonas aeruginosa isocitrate dehydrogenase, idh (see paper)
70% identity, 98% coverage: 6:740/747 of query aligns to 1:734/737 of 6g3uA
5kvuA Crystal structure of isocitrate dehydrogenase-2 in complex with NADP(+) from mycobacterium tuberculosis
68% identity, 98% coverage: 8:740/747 of query aligns to 4:736/738 of 5kvuA
5z16B A novel dimeric isocitrate dehydrogenase from acinetobacter baumannii
68% identity, 98% coverage: 6:739/747 of query aligns to 1:735/739 of 5z16B
4zdaA Crystal structure of isocitrate dehydrogenase in complex with isocitrate and mn from m. Smegmatis
67% identity, 98% coverage: 8:739/747 of query aligns to 3:735/735 of 4zdaA
1itwA Crystal structure of the monomeric isocitrate dehydrogenase in complex with isocitrate and mn (see paper)
62% identity, 99% coverage: 4:739/747 of query aligns to 1:736/740 of 1itwA
1j1wA Crystal structure of the monomeric isocitrate dehydrogenase in complex with NADP+ (see paper)
62% identity, 98% coverage: 7:739/747 of query aligns to 3:735/738 of 1j1wA
P16100 Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii (see 2 papers)
62% identity, 99% coverage: 4:739/747 of query aligns to 2:737/741 of P16100
Sites not aligning to the query:
P50216 Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
60% identity, 98% coverage: 6:740/747 of query aligns to 2:734/738 of P50216
3mbcA Crystal structure of monomeric isocitrate dehydrogenase from corynebacterium glutamicum in complex with NADP (see paper)
60% identity, 98% coverage: 6:740/747 of query aligns to 1:733/735 of 3mbcA
2b0tA Structure of monomeric NADP isocitrate dehydrogenase (see paper)
60% identity, 98% coverage: 6:740/747 of query aligns to 1:733/735 of 2b0tA
7y1uA Crystal structure of isocitrate dehydrogenase from campylobacter corcagiensis
53% identity, 98% coverage: 8:739/747 of query aligns to 2:722/723 of 7y1uA
>GFF3859 FitnessBrowser__Marino:GFF3859
MTSSKAKIVYTLTDEAPALATRSLLPILETYAKPAGIEFETSDISLAARILANFPDYLEE
DQRVPDALAELGEYTKDPDANIIKLPNISASIPQLRAAIKELNEQGYNVPEYKENPENDE
EKEIQSRYAKVLGSAVNPVLREGNSDRRAPTAVKAFARKYPHSMGEWSPASRTHVAHMRG
GDFYSSEQSVTLDKATKANIVFENKQGKQTVLKSDLPLQEGEVLDGMFMSKKALVKFFED
AIADCENTGVMFSLHVKATMMKISHPIVFGHAVKVFYKDLFDKYGELFDEIGVNPNNGLS
SVVEKIKQLPESKQEQIQEDLHACYEHRPEIAMVDSVKGITNLHVPSDVIVDASMPAMIR
NSGKMWARDNKLKDTKAVMPESTYATIYQEVINFCKTHGAFDPTTMGTVPNVGLMAQKAE
EYGSHDKTFEIKEDGVVRVVAEDGTVLTEHNVEKGDIWRACQTKDLPIRDWVKLAVNRAR
ATGMPAVFWLDDERAHDAQLIQKVNTYLKDHDTEGLDIRIMSPVRAIRWTMERLIRGLDT
ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLLNGGGLYETGAGGSAPKHVQQLIQENH
LRWDSLGEFLATAVSLDELGEKQNNERARLLGQTLDKATERLLENNQSPSRVTGELDNRG
SHFHLARYWAEELANQDSDKELKEFFTKLSAQLEENKDKILEEMTVVQGNPADIGGYYHP
PMEKVCEVMQPSATLNRILEEARASVK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory