SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF3888 FitnessBrowser__WCS417:GFF3888 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

Q02I31 Putative pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
92% identity, 100% coverage: 1:118/118 of query aligns to 1:118/118 of Q02I31

query
sites
Q02I31
M
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M
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T
T
 
A
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L
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Q
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H
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C
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C
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P
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2v6tB Crystal structure of a complex of pterin-4a-carbinolamine dehydratase from toxoplasma gondii with 7,8-dihydrobiopterin (see paper)
29% identity, 75% coverage: 27:115/118 of query aligns to 14:100/100 of 2v6tB

query
sites
2v6tB
L
 
L
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-
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G
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E

Query Sequence

>GFF3888 FitnessBrowser__WCS417:GFF3888
MTTLNQAHCEACRADAPQVSDEELPVLLKQIPDWNIEVRDGVMQLEKVFLFKNFKFALAF
TNAMGEISEAEGHHPGLLTEWGKVTVTWWSHSIKGLHRNDFIMAARTDEVAKDAEGRK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory