Comparing GFF3965 FitnessBrowser__Marino:GFF3965 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
48% identity, 91% coverage: 22:258/260 of query aligns to 5:245/247 of 4ib2A
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
45% identity, 91% coverage: 25:260/260 of query aligns to 2:241/241 of 4qhqA
4yahX Crystal structure of the methionine binding protein, metq (see paper)
47% identity, 82% coverage: 49:260/260 of query aligns to 30:243/245 of 4yahX
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
46% identity, 87% coverage: 33:259/260 of query aligns to 10:235/235 of 3tqwA
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
44% identity, 85% coverage: 41:260/260 of query aligns to 49:272/272 of P04846
Sites not aligning to the query:
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
39% identity, 91% coverage: 23:259/260 of query aligns to 3:240/240 of 1xs5A
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
40% identity, 92% coverage: 23:260/260 of query aligns to 4:240/240 of 4oteB
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
44% identity, 75% coverage: 49:244/260 of query aligns to 33:228/237 of 3k2dA
3gxaC Crystal structure of gna1946 (see paper)
39% identity, 86% coverage: 37:259/260 of query aligns to 16:237/244 of 3gxaC
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
38% identity, 86% coverage: 37:259/260 of query aligns to 15:236/240 of 6dzxA
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
32% identity, 92% coverage: 23:260/260 of query aligns to 2:242/242 of 4ntlA
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
34% identity, 87% coverage: 36:260/260 of query aligns to 30:260/260 of 6jf1A
Sites not aligning to the query:
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
35% identity, 76% coverage: 38:235/260 of query aligns to 14:216/255 of 1p99A
>GFF3965 FitnessBrowser__Marino:GFF3965
MNLKKTLAALAAAATFSGAVAAEELSVAATPVPHAEILEFVKPQLAEQGVELDVKVFTDY
IQPNIQVDQKRMDANFFQHQPYLDEFNEGRGTNLVTVTGVHVEPFGAYSSKIESLDELKE
GAVVAIPNDPTNGGRALLLLQKAGVITLKDESKITATPRDIADNPKDLDFKELEAATLPR
ILNQVDLALINTNYALEAGLNPSEDALVIEGSESPYVNILVARPDNKDSEAMQKLAAALK
SDAVRDFIMEKYEGAVVPAF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory