Comparing GFF4046 FitnessBrowser__Marino:GFF4046 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
2a9gD Structure of c406a arginine deiminase in complex with l-arginine (see paper)
55% identity, 99% coverage: 6:409/409 of query aligns to 3:405/406 of 2a9gD
1s9rA Crystal structure of arginine deiminase covalently linked with a reaction intermediate (see paper)
32% identity, 99% coverage: 6:409/409 of query aligns to 10:407/409 of 1s9rA
1lxyA Crystal structure of arginine deiminase covalently linked with l- citrulline (see paper)
32% identity, 99% coverage: 6:409/409 of query aligns to 10:407/409 of 1lxyA
>GFF4046 FitnessBrowser__Marino:GFF4046
MSEQTLGVHSETGTLRQVIICRPGLAHRRLTPSNCDALLFDDVFWVKQAQKDHDVFASVM
RGRGVEVLDVNELLAETLAIPEGRAWILDHRINWNHIGVGMVSDLRAWMDELPEKALAEF
LIGGLEVGDLPFDPVGLFGNHLGRFGFVLPPLPNFLFTRDNSAWVYGGVTLNPMYWVARK
PETLLMAAIYRFHPKFAGKVNVHWGDPLEDHGLATLEGGDIMPLGNRTVLVGMGERSSPQ
AIGQLSKALFDGGMVDRVIACQLPKTRSAMHLDTVFTFCGGNVVTAFKEVADAVICYDLR
PGEGAKTLAFNQDSRHLFEVVAEILGYPALEVVPTGGDTPEEREREQWNDGNNVLALSPG
VVVGYDRNDDTNAALSAAGIEVLAIPGAELGRGRGGGRCMSCPTIRDAI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory