SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF4068 Psest_4141 3-carboxymuconate cyclase to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
29% identity, 70% coverage: 102:379/397 of query aligns to 56:314/331 of P52697

query
sites
P52697
P
 
P
V
 
E
G
 
F
R
 
R
V
 
V
S
 
L
A
 
A
W
 
Y
Q
 
R
L
 
I
D
 
A
S
 
P
S
 
D
S
 
D
E
 
G
H
 
A
Q
 
L
L
 
T
I
 
F
G
 
A
Q
 
A
N
 
E
I
 
S
S
 
A
L
 
L
G
 
P
D
 
G
E
 
S
P
 
P
T
 
T
H
 
H
A
 
I
S
 
S
L
 
T
S
 
D
H
 
H
D
 
Q
G
 
G
R
 
Q
Y
 
F
L
 
V
F
 
F
I
 
V
S
 
G
N
 
S
Y
 
Y
G
 
N
S
 
A
R
 
-
P
 
-
N
 
-
P
 
-
G
 
-
G
 
G
S
 
N
L
 
V
A
 
S
V
 
V
M
 
T
P
 
R
L
 
L
A
 
-
E
 
E
D
 
D
G
 
G
H
 
L
P
 
P
L
 
V
P
 
G
V
 
V
T
 
V
Q
 
D
I
 
V
L
 
V
A
 
E
H
 
G
Q
 
L
S
 
D
S
 
G
G
 
-
V
 
-
H
 
-
P
 
-
E
 
-
R
 
-
Q
 
-
R
 
-
S
 
-
A
 
-
H
 
-
V
 
C
H
 
H
S
 
S
A
 
A
V
 
N
P
 
I
S
 
S
P
 
P
D
 
D
G
 
N
K
 
R
R
 
T
L
 
L
L
 
W
V
 
V
S
 
P
D
 
A
L
 
L
G
 
K
A
 
Q
D
 
D
R
 
R
V
 
I
F
 
C
V
 
L
Y
 
F
R
 
T
Y
 
V
D
 
-
P
 
-
Q
 
-
N
 
S
A
 
D
E
 
D
R
 
G
P
 
H
L
 
L
Q
 
V
A
 
A
D
 
Q
E
 
D
P
 
P
A
 
A
S
 
E
I
 
V
E
 
T
L
 
T
P
 
V
P
 
E
G
 
G
S
 
A
G
 
G
P
 
P
R
 
R
H
 
H
L
 
M
V
 
V
F
 
F
H
 
H
P
 
P
N
 
N
G
 
E
K
 
Q
H
 
Y
A
 
A
Y
 
Y
L
 
C
A
 
V
L
 
N
E
 
E
L
 
L
S
 
N
A
 
S
Q
 
S
V
 
V
A
 
D
S
 
V
F
 
W
D
 
E
Y
 
L
T
 
K
N
 
D
-
 
P
-
 
H
G
 
G
T
 
N
L
 
I
T
 
E
R
 
C
R
 
V
Q
 
Q
L
 
T
L
 
L
D
 
D
L
 
M
K
 
M
D
 
P
A
 
E
G
 
N
N
 
F
D
 
S
V
 
D
R
 
T
H
 
R
S
 
W
P
 
A
G
 
A
A
 
D
I
 
I
H
 
H
S
 
I
S
 
T
A
 
P
D
 
D
G
 
G
R
 
R
F
 
H
L
 
L
Y
 
Y
V
 
A
S
 
C
D
 
D
R
 
R
G
 
-
D
 
T
Y
 
A
N
 
S
H
 
L
I
 
I
I
 
T
V
 
V
F
 
F
A
 
S
I
 
V
E
 
S
A
 
E
D
 
D
G
 
G
T
 
S
L
 
V
R
 
L
E
 
S
I
 
K
Q
 
E
R
 
G
R
 
F
S
 
Q
S
 
P
E
 
T
G
 
E
R
 
T
E
 
Q
P
 
P
R
 
R
E
 
G
F
 
F
A
 
N
I
 
V
T
 
D
A
 
H
D
 
S
G
 
G
R
x
K
F
 
Y
M
 
L
L
 
I
I
 
A
A
 
A
N
 
G
Q
 
Q
L
 
K
S
 
S
D
 
H
E
 
H
L
 
I
V
 
S
V
 
V
I
 
Y
R
 
E
R
 
I
D
 
V
P
 
G
D
 
E
S
 
Q
G
 
G
Q
 
L
L
 
L
G
 
H
E
 
E
K
 
K

Query Sequence

>GFF4068 Psest_4141 3-carboxymuconate cyclase
MTTLTRGNWPTLLRLVFALLVGALLAGGARAETDDMHILIGSYTHDSDSPGILRLRFDPA
TGQIDPKPVQTLTSDNPSWLVLDDKRGRLYATNENGPAHADPVGRVSAWQLDSSSEHQLI
GQNISLGDEPTHASLSHDGRYLFISNYGSRPNPGGSLAVMPLAEDGHPLPVTQILAHQSS
GVHPERQRSAHVHSAVPSPDGKRLLVSDLGADRVFVYRYDPQNAERPLQADEPASIELPP
GSGPRHLVFHPNGKHAYLALELSAQVASFDYTNGTLTRRQLLDLKDAGNDVRHSPGAIHS
SADGRFLYVSDRGDYNHIIVFAIEADGTLREIQRRSSEGREPREFAITADGRFMLIANQL
SDELVVIRRDPDSGQLGEKLQTLTVGRPSDIKLLAPN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory