Comparing GFF4068 Psest_4141 3-carboxymuconate cyclase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
29% identity, 70% coverage: 102:379/397 of query aligns to 56:314/331 of P52697
>GFF4068 Psest_4141 3-carboxymuconate cyclase
MTTLTRGNWPTLLRLVFALLVGALLAGGARAETDDMHILIGSYTHDSDSPGILRLRFDPA
TGQIDPKPVQTLTSDNPSWLVLDDKRGRLYATNENGPAHADPVGRVSAWQLDSSSEHQLI
GQNISLGDEPTHASLSHDGRYLFISNYGSRPNPGGSLAVMPLAEDGHPLPVTQILAHQSS
GVHPERQRSAHVHSAVPSPDGKRLLVSDLGADRVFVYRYDPQNAERPLQADEPASIELPP
GSGPRHLVFHPNGKHAYLALELSAQVASFDYTNGTLTRRQLLDLKDAGNDVRHSPGAIHS
SADGRFLYVSDRGDYNHIIVFAIEADGTLREIQRRSSEGREPREFAITADGRFMLIANQL
SDELVVIRRDPDSGQLGEKLQTLTVGRPSDIKLLAPN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory