SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF4101 FitnessBrowser__WCS417:GFF4101 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
55% identity, 96% coverage: 3:159/163 of query aligns to 1:157/158 of 2yjvC

query
sites
2yjvC
H
 
K
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Y
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D
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E
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L
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C
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D
A
 
I
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Y
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D
 
E
L
 
D
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N
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V
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V
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E
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P
M
 
L
F
 
F
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S
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N
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F
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G
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A
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F
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I
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T
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V
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C
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F
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E
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D
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N
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G
L
 
L
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L
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Y
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D
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L
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L
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E
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Q
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N
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G
A
 
R
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G
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R
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V
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L
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V
V
 
V
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D
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G
G
 
G
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G
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R
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R
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A
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L
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M
 
E
I
 
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A
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A
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N
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E
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W
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E
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G
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L
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V
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I
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Y
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G
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E
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E
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D
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A
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L

1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
46% identity, 91% coverage: 6:154/163 of query aligns to 7:155/156 of 1nxjA

query
sites
1nxjA
T
 
T
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A
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D
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L
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D
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|
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G
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D
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A
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G
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G
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G
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V

Query Sequence

>GFF4101 FitnessBrowser__WCS417:GFF4101
MNHYVTPDLCDAYPDLVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQADQPGAGK
VLVVDGGGSLRRALLGDMIAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPMKT
DKRGIGDLNVVVTFAGVTFRPGEYIYADNNGVIVSPSPLKMPE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory