Comparing GFF4123 FitnessBrowser__WCS417:GFF4123 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
Q9I2Y2 Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
89% identity, 100% coverage: 1:205/205 of query aligns to 1:205/205 of Q9I2Y2
1rkvA Structure of phosphate complex of thrh from pseudomonas aeruginosa (see paper)
89% identity, 100% coverage: 1:205/205 of query aligns to 2:206/206 of 1rkvA
1rkuA Crystal structure of thrh gene product of pseudomonas aeruginosa (see paper)
89% identity, 100% coverage: 1:205/205 of query aligns to 2:206/206 of 1rkuA
>GFF4123 FitnessBrowser__WCS417:GFF4123
MEIACLDLEGVLVPEIWIAFAEKTGIESLRATTRDIPDYDVLMKQRLRILDEHGLKLADI
QAVIATLKPLDGAIEFVNWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHRLITDDTD
RVVSYQLRQKDPKRQSVLAFKSLYYRVIAAGDSYNDTTMLGEADCGILFHAPENVIREFP
QFPAVHTFEDLKQAFIKASNRPLSL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory