Comparing GFF4125 FitnessBrowser__Marino:GFF4125 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 19 hits to proteins with known functional sites (download)
P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12) (see 3 papers)
50% identity, 96% coverage: 14:346/346 of query aligns to 18:348/348 of P0AFK9
Sites not aligning to the query:
1poy1 Spermidine/putrescine-binding protein complexed with spermidine (dimer form) (see paper)
51% identity, 94% coverage: 23:346/346 of query aligns to 2:323/323 of 1poy1
7xjnA Structure of vcpotd1 in complex with norspermidine
51% identity, 93% coverage: 23:343/346 of query aligns to 3:320/322 of 7xjnA
4eqbA 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes
43% identity, 87% coverage: 23:322/346 of query aligns to 2:298/323 of 4eqbA
Sites not aligning to the query:
7oyxB E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d y87s f88y s247d in complex with spermidine (see paper)
34% identity, 94% coverage: 23:346/346 of query aligns to 2:342/347 of 7oyxB
7oywA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l s247d in complex with spermidine (see paper)
34% identity, 94% coverage: 23:346/346 of query aligns to 2:342/348 of 7oywA
P31133 Putrescine-binding periplasmic protein PotF from Escherichia coli (strain K12) (see 3 papers)
33% identity, 100% coverage: 1:346/346 of query aligns to 4:370/370 of P31133
Sites not aligning to the query:
7oyvA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88a s247d in complex with spermidine (see paper)
34% identity, 93% coverage: 23:345/346 of query aligns to 2:341/341 of 7oyvA
Sites not aligning to the query:
6ye7A E.Coli's putrescine receptor potf complexed with cadaverine (see paper)
33% identity, 93% coverage: 23:345/346 of query aligns to 2:341/341 of 6ye7A
6ye6A E.Coli's putrescine receptor potf complexed with agmatine (see paper)
33% identity, 93% coverage: 23:345/346 of query aligns to 2:341/341 of 6ye6A
6ye0B E.Coli's putrescine receptor potf complexed with putrescine (see paper)
33% identity, 93% coverage: 23:345/346 of query aligns to 2:341/341 of 6ye0B
1a99A Putrescine receptor (potf) from e. Coli (see paper)
33% identity, 93% coverage: 23:345/346 of query aligns to 2:341/341 of 1a99A
Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
31% identity, 98% coverage: 9:346/346 of query aligns to 9:367/367 of Q9I6J1
Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
30% identity, 100% coverage: 1:346/346 of query aligns to 5:365/365 of Q9I6J0
3ttmA Crystal structure of spud in complex with putrescine (see paper)
32% identity, 93% coverage: 23:345/346 of query aligns to 3:341/341 of 3ttmA
3ttnA Crystal structures of polyamine receptors spud and spue from pseudomonas aeruginosa (see paper)
30% identity, 92% coverage: 25:343/346 of query aligns to 2:335/335 of 3ttnA
4euoA Structure of atu4243-gaba sensor (see paper)
23% identity, 78% coverage: 40:308/346 of query aligns to 21:279/313 of 4euoA
Sites not aligning to the query:
6hlyA Structure in p212121 form of the pbp agtb in complex with agropinic acid from a.Tumefacien r10 (see paper)
23% identity, 79% coverage: 39:313/346 of query aligns to 24:285/320 of 6hlyA
Sites not aligning to the query:
3e13X Iron reconstituted ferric binding protein from campylobacter jejuni
23% identity, 76% coverage: 25:286/346 of query aligns to 3:267/317 of 3e13X
>GFF4125 FitnessBrowser__Marino:GFF4125
MKKLALAGLLAVGLTGCSSEEPQVLNLYNWSEYMPQEVLDRFTEETGIQVVYTTYDSNEA
MYARLKLLDDSAAYDLAVPSTYYVSKMRQEDLLLPIDRSKIEGFDNLDPELVNLDIDPEN
QFSVPYLWGTTGLAVDTADIEGEPVTAWEDLWEDRFDGRVMLTNDMREVFHVGLRVLGYS
GNSTNPDEIEAAYEKLAELMPSVRTFNSDAPRMPYLEGEADVGMIWNGEAVMGKDTMESL
EYVYPEEGIIAWLDSFVIPKNAKNPEAAHQFISFVLQPEISALISEEIGYATPNLAARDL
LPDEVANNRASYPNATDMINAEFQTDIGDDALQVYAKYWEMLKSGR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory