Comparing GFF4128 FitnessBrowser__Marino:GFF4128 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
22% identity, 88% coverage: 29:268/274 of query aligns to 44:282/285 of 7cagA
>GFF4128 FitnessBrowser__Marino:GFF4128
MLTPFLLWIVLLVLLPHLQMLRVSFLVRESWDTLAWGLEQYQNFFTESYYWRTFVRTGVM
SLFTTFLTLIIAFPIAWYIARLARGRSKGFLFLACLIPFWASELVRTYGWMILLRESGLF
SSWLQALGWADGPVEMLYNDVAVIIGLVYNGLLFMVVPLVTTLDGMDENLVEAGYDLGGG
HGTVLREIVVPWAMPGIVSGCIVVFMLTLGSYLTPVLMGGKDSAWFTEQIFTQFITRFNW
EQGAALGVLLLVLSSVIVWLGLKISGQSLRKVMG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory