Comparing GFF4212 FitnessBrowser__psRCH2:GFF4212 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5ti8B Crystal structure of an aspartate aminotransferase from pseudomonas (see paper)
77% identity, 93% coverage: 33:451/452 of query aligns to 1:384/384 of 5ti8B
6gwiB The crystal structure of halomonas elongata amino-transferase (see paper)
68% identity, 98% coverage: 5:448/452 of query aligns to 2:447/450 of 6gwiB
7qx0B Transaminase structure of plurienzyme (tr2e2) in complex with plp (see paper)
67% identity, 98% coverage: 5:448/452 of query aligns to 1:440/443 of 7qx0B
7qx3A Structure of the transaminase tr2e2 with eos (see paper)
68% identity, 92% coverage: 32:448/452 of query aligns to 1:419/422 of 7qx3A
6s4gA Crystal structure of the omega transaminase from chromobacterium violaceum in complex with pmp (see paper)
59% identity, 97% coverage: 6:444/452 of query aligns to 2:442/453 of 6s4gA
7q9xAAA Probable aminotransferase
59% identity, 97% coverage: 6:444/452 of query aligns to 3:443/455 of 7q9xAAA
4a6tC Crystal structure of the omega transaminase from chromobacterium violaceum in complex with plp (see paper)
59% identity, 97% coverage: 6:444/452 of query aligns to 3:443/455 of 4a6tC
4ba5A Crystal structure of omega-transaminase from chromobacterium violaceum (see paper)
59% identity, 91% coverage: 33:444/452 of query aligns to 2:415/427 of 4ba5A
7ypmA Crystal structure of transaminase cc1012 complexed with plp and l- alanine (see paper)
57% identity, 96% coverage: 12:444/452 of query aligns to 9:445/454 of 7ypmA
7ypnD Crystal structure of transaminase cc1012 mutant m9 complexed with plp (see paper)
56% identity, 96% coverage: 12:444/452 of query aligns to 9:445/455 of 7ypnD
4a6rA Crystal structure of the omega transaminase from chromobacterium violaceum in the apo form, crystallised from polyacrylic acid (see paper)
59% identity, 91% coverage: 33:444/452 of query aligns to 1:411/423 of 4a6rA
5kr6B Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
44% identity, 99% coverage: 1:449/452 of query aligns to 3:459/460 of 5kr6B
6g4fA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with pmp (see paper)
43% identity, 96% coverage: 15:448/452 of query aligns to 9:447/451 of 6g4fA
6g4eA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) (see paper)
43% identity, 96% coverage: 15:448/452 of query aligns to 9:447/451 of 6g4eA
6g4dB Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp (see paper)
43% identity, 96% coverage: 15:448/452 of query aligns to 9:447/453 of 6g4dB
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
43% identity, 95% coverage: 16:444/452 of query aligns to 15:444/448 of 6io1B
5ghgB Transaminase w58l with smba
42% identity, 97% coverage: 13:449/452 of query aligns to 6:426/433 of 5ghgB
5kquC Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
42% identity, 100% coverage: 1:451/452 of query aligns to 1:459/459 of 5kquC
D6R3B6 Vanillin aminotransferase; Putative aminotransferase; pAMT; EC 2.6.1.119 from Capsicum frutescens (Cayenne pepper) (Tabasco pepper) (see paper)
44% identity, 89% coverage: 34:436/452 of query aligns to 29:437/459 of D6R3B6
Q94CE5 Gamma-aminobutyrate transaminase POP2, mitochondrial; AtGABA-T; Gamma-aminobutyric acid aminotransferase 1; Protein HEXENAL RESPONSE 1; Protein POLLEN-PISTIL INCOMPATIBILITY 2; AtPOP2; EC 2.6.1.96 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
44% identity, 91% coverage: 34:446/452 of query aligns to 72:491/504 of Q94CE5
>GFF4212 FitnessBrowser__psRCH2:GFF4212
MSDSQTLHWQALSRDHHLPPFTDYKALNAKGTRIITKASGVYLWDSEGHKILDAMAGLWC
VNLGYGREELVEAATRQMRELPYYNLFFQTAHPPAVALAKAIADIAPAGMNHVFFTGSGS
EANDTVLRMVRHYWAIKGQPAKKVVIGRWNGYHGSTIAGASLGGMKAMHEQSDGPIPGIE
HIDQPYWFGEGGDMSPEEFGVRIADQLEQKILEVGEDKVAAFIAEPIQGAGGVIIPPETY
WPRIKEILARYDILFIADEVICGFGRTGEWFGSDYYGLEPDLMPIAKGLTSGYIPMGGVI
VRDEVVQTLNEGGEFYHGFTYSGHPVAAAVALENIRILREEKIVERVKTKTAPYLQSRWQ
ELLDHPLVGEARGVGLLGALELVKNKKTRERFADPGVGMLCREHCFRNGLVMRAVGDTMI
ISPPLVISEEQIDELIGKVRLCLDATAKDALG
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Lawrence Berkeley National Laboratory