Comparing GFF4218 FitnessBrowser__psRCH2:GFF4218 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
G7JT50 Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
56% identity, 99% coverage: 1:364/368 of query aligns to 1:373/374 of G7JT50
3h7cX Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
57% identity, 97% coverage: 7:364/368 of query aligns to 7:366/369 of 3h7cX
Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
55% identity, 99% coverage: 1:364/368 of query aligns to 1:373/383 of Q8GWW7
6nicD Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide (see paper)
57% identity, 96% coverage: 12:364/368 of query aligns to 2:359/360 of 6nicD
Q837U5 Putative agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Enterococcus faecalis (strain ATCC 700802 / V583) (see paper)
50% identity, 97% coverage: 6:363/368 of query aligns to 8:363/365 of Q837U5
6b2wA C. Jejuni c315s agmatine deiminase with substrate bound (see paper)
25% identity, 95% coverage: 18:366/368 of query aligns to 15:332/333 of 6b2wA
>GFF4218 FitnessBrowser__psRCH2:GFF4218
MTTLTTTPRTDGYFMPAEWAPHSQTWMVWPQRPDNWRDNGSPAQAAFTAVAKAIARFEPV
TVCASAEEYLAARAALNDPRIRVVEISTDDAWVRDTGPTFIVDDNGGLRGVDWTFNAWGG
EDGGLYADWQRDDEVARKILEIEYCDRYRTEGFVLEGGSIHVDGQGTLITTEECLLNRNR
NPQLTREQIEAVLREHLAVDSIIWLPHGLFNDETDGHVDNFCCFVRPGEVLLAWTDDAND
PNFERCQAAMAVLQNARDAKGRALTVHKMPIPGPLHATAEECAGVVALDGSQPRDPSVRL
AGSYVNFLIVNGGIIAPAFGDPLDAEAERILAQVFPEHQVVMAPGREILLGGGNIHCITQ
QQPAPLLR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory