Comparing GFF4243 FitnessBrowser__psRCH2:GFF4243 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
48% identity, 94% coverage: 15:254/256 of query aligns to 2:245/247 of 4ib2A
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
49% identity, 92% coverage: 21:256/256 of query aligns to 2:241/241 of 4qhqA
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
42% identity, 93% coverage: 19:255/256 of query aligns to 3:240/240 of 1xs5A
4yahX Crystal structure of the methionine binding protein, metq (see paper)
44% identity, 83% coverage: 45:256/256 of query aligns to 30:243/245 of 4yahX
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
42% identity, 92% coverage: 21:255/256 of query aligns to 2:235/235 of 3tqwA
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
43% identity, 86% coverage: 37:256/256 of query aligns to 49:272/272 of P04846
Sites not aligning to the query:
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
40% identity, 91% coverage: 23:256/256 of query aligns to 8:240/240 of 4oteB
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
42% identity, 80% coverage: 45:249/256 of query aligns to 33:237/237 of 3k2dA
3gxaC Crystal structure of gna1946 (see paper)
41% identity, 86% coverage: 35:255/256 of query aligns to 18:237/244 of 3gxaC
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
41% identity, 86% coverage: 35:255/256 of query aligns to 17:236/240 of 6dzxA
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
38% identity, 93% coverage: 20:256/256 of query aligns to 12:260/260 of 6jf1A
Sites not aligning to the query:
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
35% identity, 92% coverage: 21:256/256 of query aligns to 4:242/242 of 4ntlA
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
37% identity, 86% coverage: 34:254/256 of query aligns to 14:239/255 of 1p99A
>GFF4243 FitnessBrowser__psRCH2:GFF4243
MKKLIVALAAVAAFSAQAETLNVAATAVPHAELLEFVKPQLAEQGVTLNVKVFTDYVQPN
IQVAEKRLDANFFQHQPYLDEFNKGKGTDLVSVAGVHIEPFGAYSSKHKSVEALPNGANV
VIPNDATNGGRALLLLAKAGVISLKDGAGITATPKDIADNPKRIKVRELEAATLPRVLTQ
VDLALINTNYALEAKLNPTQDALVIEGSDSPYVNILVARPDNKDSDAMQKLAAALHSEEV
RKFIEEKYKGAVVPAF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory