Comparing GFF4368 FitnessBrowser__WCS417:GFF4368 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
55% identity, 100% coverage: 1:458/458 of query aligns to 1:448/448 of 4rqoB
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
46% identity, 31% coverage: 17:156/458 of query aligns to 1:136/140 of 2iafA
>GFF4368 FitnessBrowser__WCS417:GFF4368
MSLSVFDLFKIGIGPSSSHTVGPMRAAARFVEGLKRDNLLGTSLSLKVELYGSLGATGKG
HGSDKAVLLGLEGEHPDTVNTETVATRLAQMRKDGRLNLLGEHSIAFNEKEHLAMIRKPL
AYHPNGMIFRAFDAANIQIRSREYYSVGGGFVVDEDAAGADRIVEDATPLTFPFKHAKDL
LGHCSTYGLSISQVMMTNESAWRPEAETRAGLLRIWQVMQDCVDAGCRNEGILPGGLKVK
RRAAALHRQLCKHPESALRDPLSVLDWVNLYALAVNEENANGGRVVTAPTNGAAGIVPAV
LHYYMRFIPGANEDGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGALCE
VLGGSVSQVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGSVKAINAVRMALRGDGQ
HFVSLDKVIRTMRQTGADMKSKYKETARGGLAVNIIEC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory