Comparing GFF4838 FitnessBrowser__WCS417:GFF4838 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
7wxiA Gpr domain of drosophila p5cs filament with glutamate and atpgammas (see paper)
40% identity, 97% coverage: 12:418/421 of query aligns to 5:409/430 of 7wxiA
7wxgA Gpr domain closed form of drosophila p5cs filament with glutamate, atp, and NADPH (see paper)
40% identity, 97% coverage: 12:418/421 of query aligns to 5:409/430 of 7wxgA
4jbeB 1.95 angstrom crystal structure of gamma-glutamyl phosphate reductase from saccharomonospora viridis.
32% identity, 98% coverage: 2:414/421 of query aligns to 1:408/412 of 4jbeB
>GFF4838 FitnessBrowser__WCS417:GFF4838
MTESVLDYMTRLGRAARQASRLIARASTAQKNRALLAAADALDASRSELTAANEQDLANG
RANGLEPALLDRLALTPARIDDMIEGLRQVAKLPDPIGEIRDMRYLPSGIQVGKMRVPLG
VIGIIYESRPNVTIDAASLCLKSGNATILRGGSEAINSNRAIAACIQQGLAVAELPAEVV
QVVETTDRAAVGALITMPEFVDVIVPRGGKSLIERVSRDAKVPVIKHLDGVCHVYIDIAA
DIDKAIRIADNAKTHRYAPCNTMETLLVHVGIADRVLPPLAAIYRDKGVELRGCGRTRAL
LGADVIDATELDWYTEYTAPILSIKIVDDLDEAIEHINTYGSKHTDAIVSEHFSDARRFL
TEVDSASVMINASTRFADGFEYGLGAEIGISTDKLHARGPVGLEGLTSEKYVVFGDGHVR
T
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory